Thel051455.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- grau
- Assembly
- GCA_963556165.1
- Location
- OY744482.1:52273014-52274440[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0018 0.65 13.4 0.3 2 23 149 171 148 171 0.96 2 10 0.048 18 8.8 0.6 6 23 180 197 180 197 0.99 3 10 0.016 5.9 10.4 2.9 1 23 203 226 203 226 0.92 4 10 2e-05 0.0076 19.4 2.9 1 23 234 256 234 256 0.98 5 10 0.00018 0.068 16.4 0.5 3 23 266 287 264 287 0.95 6 10 0.0075 2.8 11.4 1.2 2 23 294 316 293 316 0.95 7 10 0.32 1.2e+02 6.2 1.9 2 23 325 346 324 346 0.95 8 10 0.045 17 8.9 3.0 1 23 353 376 353 376 0.93 9 10 0.00014 0.052 16.8 3.3 1 23 382 404 382 404 0.98 10 10 1e-05 0.0037 20.4 1.3 1 23 410 433 410 433 0.98
Sequence Information
- Coding Sequence
- ATGGAAGTTGAGGAATTTTGTCGTGTTTGCTGCAAGAATAATGAATCTTTAATAGAAATTTTCATGCCAAGCGATGTTTGTACGATACTTCAAAAACATCTGTGGTTTGagattGAGCAAGCCGATCGTCTTGGGAAGATTTGTGAGCCTTGTTGGACaactgtaaaaaattttaatcagttTTACACCAAAGCATATAATTCTTACGCAgcgtattatttaaaattggacgaaaataaaactaaagagCAGGAAAAAGTTGACGATGATGCCCATGAAGTCCCTTCAACAAACTCAGAATCCGATTACGAAAGTAATGAAATTAGTGTTGACGATGACGATAATAGTAAAGAACAAACCATTAAACAACCAGTCAAGAAAAAGAAGCAAGGAAATACCCAAACCGCTCAGGAAgatgaaaatattcgaaaattctTCTCTCTGAGCTGCGAATTGTGTCCGACTCAGTTTCGAGTGTTTGTTGATCTCAAAATCCATTACAGAaaagaacataaaataaaaggatatatTAAATGTTGTGGTAAAAAGTTAAATCGTAGAAGCACGGTATTAGATCACATGCAACGACACGAGAATCCCGATATATTCAAGTGCACCATTTGTGACAAGTGTATGGCTACTAAGCAAACTCTTTACATCCATAACGTTACAAAGCATGCATcaacttttgaaaaatcattcaaatgtcCACATTGTCCTAAGAAATTTgctcgaaattttgtaatgcgacGACATTTGCTCTCGCACGCCTCGTTAACCGATAAAAAATATGGTTGTGACAAATGCGAGTTATCATTTATTACAAATAGTTTATTGCAAACTCATAAACGTGCAACCCACGAAGGCGCTTTAACAACTGTTTGTGAAATTTGTGCCAAATCATTTcgatgtaaacaaaattatgatcgACACATGGCGATAGAGCACTGTGCTTCGCCTCAACCCAAAGTTCAGTGTCATTTATGCGGCGTTTGGCTTAAACATGACCTTAGTCTGCGGCGACATATGAAGGCACACGAGGATTCAACAAAGTCGCATATTTGTAACATATGTGGGAAACAGTCACCTAGTCGCAGCTCGTTACTCTGCCACAAACGGTATGCTCATGTCCTGAAAAGAACccataaatgtttttattgtgaaaaagcttttaaaatgtcTAAAGAATTAAGGGAACACACGGCAACGCATACCGGTGAAGCTCTATATACTTGTCCTTATTGCCCAAAAACGTTTAATTCATCGGCCAACAGATCTTTACACAAAAGAAAAGTTCATCCACacagttaa
- Protein Sequence
- MEVEEFCRVCCKNNESLIEIFMPSDVCTILQKHLWFEIEQADRLGKICEPCWTTVKNFNQFYTKAYNSYAAYYLKLDENKTKEQEKVDDDAHEVPSTNSESDYESNEISVDDDDNSKEQTIKQPVKKKKQGNTQTAQEDENIRKFFSLSCELCPTQFRVFVDLKIHYRKEHKIKGYIKCCGKKLNRRSTVLDHMQRHENPDIFKCTICDKCMATKQTLYIHNVTKHASTFEKSFKCPHCPKKFARNFVMRRHLLSHASLTDKKYGCDKCELSFITNSLLQTHKRATHEGALTTVCEICAKSFRCKQNYDRHMAIEHCASPQPKVQCHLCGVWLKHDLSLRRHMKAHEDSTKSHICNICGKQSPSRSSLLCHKRYAHVLKRTHKCFYCEKAFKMSKELREHTATHTGEALYTCPYCPKTFNSSANRSLHKRKVHPHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01456874; iTF_01460669;
- 90% Identity
- iTF_01456874; iTF_01460669;
- 80% Identity
- -