Thel091741.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- grau
- Assembly
- GCA_963556165.1
- Location
- OY744483.1:48062542-48065904[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.8 1.4e+03 2.9 0.4 2 23 211 235 210 235 0.85 2 18 0.042 16 9.0 1.0 6 23 244 261 244 261 0.97 3 18 2.4e-05 0.009 19.2 3.8 1 23 267 289 267 289 0.98 4 18 0.005 1.9 11.9 2.1 1 23 297 319 297 319 0.98 5 18 0.00051 0.19 15.0 0.2 1 23 327 349 327 349 0.97 6 18 2.4e-05 0.0089 19.2 0.4 1 23 355 378 355 378 0.96 7 18 0.0079 2.9 11.3 4.9 2 23 387 408 386 408 0.97 8 18 0.00029 0.11 15.8 2.3 1 23 414 437 414 437 0.95 9 18 4.7e-06 0.0018 21.4 0.9 1 23 443 465 443 465 0.98 10 18 0.0036 1.3 12.4 2.7 1 21 471 491 471 492 0.95 11 18 0.087 32 8.0 0.2 2 23 600 622 599 622 0.96 12 18 1.1 3.9e+02 4.6 2.2 6 23 631 648 631 648 0.98 13 18 0.84 3.1e+02 4.9 3.3 1 23 654 676 654 676 0.97 14 18 7.8e-06 0.0029 20.8 3.5 1 23 684 706 684 706 0.98 15 18 0.037 14 9.2 0.3 1 23 714 737 714 737 0.98 16 18 0.014 5.1 10.5 0.7 3 23 745 766 744 766 0.93 17 18 1.8 6.9e+02 3.8 2.0 2 23 774 795 773 795 0.95 18 18 0.00064 0.24 14.7 0.5 1 23 802 825 802 825 0.94
Sequence Information
- Coding Sequence
- ATGCATGGTGGTGGATATAATTTTGAAGCTTTATATTCACCACCAACCCGTTTCTTGGACTTATCTTGCAAGGTCAACAATCACCAAAATTATCCAACTTCTATATGTGATGGCTGTGAACATGAAATTCTATTATTCAATGTTTATTACACACAAGTGATTGCAAATCAGAACATACTGAAAAAGAGGTATTTGAAGGAGTTTTTGGAGTTGGATGCAAAGCAATCTGAGGTTAAAGTCGAGTGGGAATGTGATCGGTTGCCGGATTCGGTTGATTCGTTTGATAATGAGGAACCATCCTGTGCATTGCACGAAGATGAAAAAATTCGAAACTTTTATAGtcttaaatgctgccaatgtgAAAATGAAACGTTCGAGACATTCGAATTACTTCAAGACCATTGCAGGAGTATCCATAAAAATGAACCACATTTGATGTGTTGTGACACCAAAATctacacaaaaaatttacttctcgAACATATCACACACCATAATAAAATTCTAGACACAGAAAAAGTAGATGGAAAGCCCGACACGAAAAACGTATTGATATTGACACCGCCGGAAAAACGTTTGAAAAAGGGACGACCAAATTATGATCAAaaaattcgtgaatttttccgTCTCAAATGTAATTTATGCGTTGATTATGAAATCTTCACATCGTTCAAACAGCTTCAGGATCATTATAGTGAGATGCATAAATCGCGCGGTTACGTCGAGTGTtgtgacaaaaaatattttcggaaaGAGCATCTAATCGATCACATAACAAATCACATAAATCCGAATGCACATAAATGCCTAGAATGCGGCAAAATGAGTAAAACTAAGAACTCACTTAAAGTGCATATGAAAAGACATATGCCTATTGAGGATCGGCCCTACCAATGTTGTGTATGTCCTTCGAGGTATGCAACGAAAACTCTACTCACTAAACATGAATTGTCACATTTATCAGAGGctgataaaaaatttacatgcgAGCAGTGTGGCAAAGCGTTTGCAATTAAATCGGTGCTggacaagcataaattaattcattcgTCTGAGCATAAATTTGTGTGCGAAAGTTGTGGCCGGTTATTTAATTCGAAGGGTAACTTGCAGCTGCACATGAATAATATGCATAATAATGATCCGAGACCTAAGCTTCAGTGTCACATTTGCCAATCttggtttaaaaataatgatacgCTGCGGAAACACATTCGCCACCATACCGAACAAAATGATTACAAGTGCGATCAATGCGATAAGgtgttttcatcaaaaaatttactCTGGTGCCATGTACGCTATGTACATACACAAATTCGAAAGTATAGCTGCAGTATATGCGAACGAACGTTTCGACGGAAATTAGAGCTGACCGAACATATGGCACGGCATGCCGGAAAAACATTGTATGAGTGCGAGAAGTGTGCCAAATCATTTATGTACAGTTCACATTTTTCACAGCATCGCAAAAATTGTCAGGTAAAGCTGGATAATGCTTACGAAAAATCGATTTGTACTACATGCTGGTGGAAAGtagaaaattttcatgtattctaTAAGCGTGTCAAAGAGAATCATACGAAATTCTATGACAGCCTTGATGAACCTCaaactaatattaaatttgaagatGAAATTGATTTGTTCGAAATCGTAGACGAttcagaaattattgaaatccagGAAGACATTGAAGAAATAGCATCACCTCTAGAAAAAAGGCGACGAGAACCTTTTAAGTCATCGACTCAAGTATTGGAAGAGGATGAAATAATcaaagaatatttcaaattagaatGTGGTATATGTTCGGCTAAGTTCAATGAGTATATAGAAATGCGTTCTCATTATCGTAAAGAACATCTAATAAGTGGTTATTTGGTGtgctgcaataaaaaatttcggcATAAAGTACGAATGTTGGAACATATTCAACAACATTTAAATCCAGATACATTTAAATGTGAACCATGCAAAAAAACTTTTCTCAGCAAACGATGTCTCTTGGACCATTTAGATAGTCATGTACCGGAAACTGAGCGAAAATACAAATGTTCGAAATGTCCCAAgagatttgttaaaaaatttcaattaaaacaacatATGATCTATCACACATCCAAAAAggataaacattttaagtgtGATCAATGTGTCTACATAGCTACTACCAATTCGATACTTCAATCGCATATACGTAAAGTGCACAATGGATCGGACGAAATTCTTTGTTATGTTTGTGCTAAACCGTTTcgtagcaaatatttttttcaaaaacattatgAACTCGAGCATACCGATGCCCAGCTTAAGGTACAGTGTCAATTGTGTAAAATGTGGTTGAAACATGAGCGTAGCCTTCGTAGTCATATGGTACGGCACAGTGAGgcgaataaacaatttttttgtgatatttgtggGAAACAATCACCAAACCGGAATGCTCTTAACCGACATAAGCAATATGCTCATGCTAAAAGGAAAGTGGAAGATGCGATAAATTGTTCAGTAAATGAAACAATCAGTGTTGTTGAACAGGATAGTTAA
- Protein Sequence
- MHGGGYNFEALYSPPTRFLDLSCKVNNHQNYPTSICDGCEHEILLFNVYYTQVIANQNILKKRYLKEFLELDAKQSEVKVEWECDRLPDSVDSFDNEEPSCALHEDEKIRNFYSLKCCQCENETFETFELLQDHCRSIHKNEPHLMCCDTKIYTKNLLLEHITHHNKILDTEKVDGKPDTKNVLILTPPEKRLKKGRPNYDQKIREFFRLKCNLCVDYEIFTSFKQLQDHYSEMHKSRGYVECCDKKYFRKEHLIDHITNHINPNAHKCLECGKMSKTKNSLKVHMKRHMPIEDRPYQCCVCPSRYATKTLLTKHELSHLSEADKKFTCEQCGKAFAIKSVLDKHKLIHSSEHKFVCESCGRLFNSKGNLQLHMNNMHNNDPRPKLQCHICQSWFKNNDTLRKHIRHHTEQNDYKCDQCDKVFSSKNLLWCHVRYVHTQIRKYSCSICERTFRRKLELTEHMARHAGKTLYECEKCAKSFMYSSHFSQHRKNCQVKLDNAYEKSICTTCWWKVENFHVFYKRVKENHTKFYDSLDEPQTNIKFEDEIDLFEIVDDSEIIEIQEDIEEIASPLEKRRREPFKSSTQVLEEDEIIKEYFKLECGICSAKFNEYIEMRSHYRKEHLISGYLVCCNKKFRHKVRMLEHIQQHLNPDTFKCEPCKKTFLSKRCLLDHLDSHVPETERKYKCSKCPKRFVKKFQLKQHMIYHTSKKDKHFKCDQCVYIATTNSILQSHIRKVHNGSDEILCYVCAKPFRSKYFFQKHYELEHTDAQLKVQCQLCKMWLKHERSLRSHMVRHSEANKQFFCDICGKQSPNRNALNRHKQYAHAKRKVEDAINCSVNETISVVEQDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -