Thel117685.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- -
- Assembly
- GCA_963556165.1
- Location
- OY744483.1:282601304-282605197[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0008 0.3 14.4 1.0 1 23 297 319 297 319 0.94 2 14 0.0012 0.44 13.9 0.7 1 23 357 379 357 379 0.94 3 14 5.3e-05 0.02 18.1 1.5 2 23 419 440 418 440 0.95 4 14 0.00013 0.05 16.9 1.7 1 23 446 468 446 468 0.98 5 14 0.003 1.1 12.6 3.4 1 23 474 497 474 497 0.94 6 14 0.0005 0.19 15.1 0.2 2 23 658 679 657 679 0.93 7 14 4.8e-05 0.018 18.3 3.9 1 23 685 707 685 707 0.98 8 14 0.003 1.1 12.6 1.6 1 23 713 736 713 736 0.94 9 14 0.00032 0.12 15.7 0.3 2 23 779 800 778 800 0.95 10 14 0.00095 0.36 14.2 5.1 1 23 806 828 806 828 0.98 11 14 9.4e-05 0.035 17.4 1.6 1 23 834 857 834 857 0.95 12 14 0.00024 0.091 16.0 0.4 2 23 891 912 890 912 0.95 13 14 0.022 8.1 9.9 4.9 1 23 918 940 918 940 0.96 14 14 0.0017 0.64 13.4 1.3 1 23 946 969 946 969 0.95
Sequence Information
- Coding Sequence
- atgagtttagaaattaatataaatatgtgCCGAATTTGCATGAAGACTAATGATGGAATATCAATTTATTCGGATACcggaattataaaaaaattccaattttgtacACAATTACAAATTTCCAAAACTGAtgatttaccaaaaataatatgtaataactGTGTTGGACGGTTGGAAATCGCTTACGACTTTTGTAAACAGGCGGAGTGttcagataaatatttaagacaGGTCATAACACATCAAAAGGAAGAAAACCAATCGGCACTGGGGAAACAGGGTCTGTACGATGAAATGGTTTTAGAAATTTATCGTACGAGGATCAAAGTAGAGCAAGATGATCAAATCGAGCAGCTGACCGATTTTGAATTAGAAGAGGTTTCGAACGTAAATATCTCACCCACGTTAGAAGGCATTAACATTAATTGTAAGGGAACTGAACGACTGACTGATAGTGTTCCTGTGTACGCGGTTGTCGGAGAATGTGGTGCAGCTGATAAAGTAAAAATAGAAGAGATTGAAGAGGCCGACATTGAAAAAATACAAGAgactaaacaaataaatttattcacaatagcGAAAGTTACTTCTATTCCTAAAACTGAATTCAATGAAACAAACGAGATTACTGGAAATGAGAGTTGTTCGCAAGAATATATCGAATCACTATCTGGCGAAACGCAGATCAAAGTAGAACAAGGCGACCAAATGAAGCAGCCGACCAATGTTAAATCGGTAAAGATTTCAGGGACGATAGAAGAAGGCATTCAGTATAAGGGAAGCAGTAGTGGAGCCGATTTagcgaaaattgaaaaattgcaaGAGACAATATTCACAATAGCGAAAGTTACTTCTATTCGTAAGAATGAGGACAAACAAACCGATAAGTTCGAGTGTATCGAATGCGGTGCCCATTTCACACGAAAAGGATCTCTCAAGCGGCATTCACTAATCCATTCGGGTGAGCGACCATCCGGGACATCATTCGCAAATGAATCACTCGAGCGGCATTCGCAAATCCAGTTGGGTGAGCGATCGTACAAGAAGGGAGGCGACCAAACCGACAAGTTCGAGTGCATCGAATGCGGTTCCAAATTCACAAGAAAAGGATCTCTCAAGCGGCATTCACTAATCCATTCGGGTGAGCGACCATCCGGGACATCACCCCAAAATAAATCACTCAAGCGGCATTCGCAAATCCTTTTGGATGAGCGATCGTACAAGAGTAAGGGAGACGACCAAACCGACAAGTGCGTGTGCATGGTATGTGGCGAACGTTTCACAACAAATGGATCACTCAAGCGGCATTCAATAACCCATTCGGGTGTGCGACCGTACAAGTGTAATTTATGCAGTCGAAGCTTTGCTCTAAGCTTTAACCTAGAATCCCATAAGAGGCTACATACGGGAGAGATAGGTTACACTTGCGAAACTTGTGGCTCACATTTCCGATCTAAGAAAACTTTAATGCAGCACGTTTTCATCAAGCACAGAAACGAGAAAaaaactgaaatggaaataaatgttataaatcaAACAGAGCAAAAAAAACAACCTACCCAGAATGGAACTACTTTAGCAGAGATAATTGAAGAAGGCGTTAACTTTAAGGGAACAGAGCAACAGGTTTATACTTGTGAATCTAAAGAGGAAGAAATTGAAGAGGAAATAATACAAGAGACGAAACCTATAAACGATATCACAATAACGGAAGTTACTTCTATTCGTAAGAATGACGACGACGAGCAAACAGAGCAAAAAAAACAACCTGAACAAAATGGAACTGCTTTAGCAGAAACAATTGAAGGCGTTCACTTACAGCGACAGGTTTATACTTGTGAATCTGAAGAGAAAgaaaaaaaggaagaaattgaCGAGGAAAAAATACAAGAGACTAAACCAATCAACGACATCACAATAACGGAAGTTATTTCTATTCGTAAGAATGACGAAGACCAAACCGATAAGATCGAATGCGACTTATGCGGTGCCCGTTTCACAAAAAGAGCATCACTCAAGCGGCATTCAATACTCCATTCGGGTGCGCGGCCGCATAAGTGTAATTTCTGTAGTCGAAGCTTTGCTCAGGCATATAACCTAGCAACCCATAAGAGGCGACATAGGGGAGAAAAAGGTTACACTTGCGAAACTTGTGGCTCACTTTTCCGATCTAAGAAAACTTTAAAGCAGCATGTTTTCATCAATCACGGAAACCAAAAAAAAGTTGAAAAGGAAATAAATGGTGTAAAAATACAAGAGACTAAACCAATAAATGACATCACAATAAGGGAAGTCTTTTCTGTTCGTAGGAGTAGCAACCCAACCGATAAGATCGAATGCACCTTATGCGGTGCCAAATTCACAAAAAGAGCATCACTCAATCGGCATTCACTAATCCATTCGGGTGAGCGGCCACATAAGTGTAACTCATGTGATCAAAGCTTTGCTCAGAGATATAATCTAATATGCCATATGATGACACATTCGGCTGAAAAACCTTACATTTGTGAAACTTGTGGCTTACCTTTCCGGCACCAGAACAGTTTAAATCGACATGTTTTTATGAAGCACGGAACCCAAAAAAAAGATGAAATGGAAATAAATGGTGTAAAAATACAAGAGACTAAACCTACTTCTATTCGTAAGAATGACAAACCAATCGATAAGATCGAATGCACCTTATGCGGCGCCAAATTCACAAAAAGAGCATCACTCAAGCGGCATTCACTAATCCATTCGGGCGAGCGGCCGCATAAGTGTAACTTATGTGATCTTAGCTTTGCTCAGAAATATACCCTATCATGCCATATGGTGCGACATGCGGATGAAAAACCTTACACTTGTAAAACTTGTGGCTTGCCTTTTCGGCTCCAGAAAACTTTAGATCGTCATGTGTTTATGAAGcacgaaaatcaaaaaAAAGCTGAAGTGgaaagaataattttgaaacaaaaagaGCAATATTGGCGTAAGCGACAATTGCTGCTTGCTAGAGAGACACCTGAAGAAGCAGCTTTGAGAAGAGAGAAAGAAGCTGCAGGAACAAGAAGGCAGCGCGATCGAGCTAAACAGATGCAAAGGTCCAAGAAATTAGAATAG
- Protein Sequence
- MSLEININMCRICMKTNDGISIYSDTGIIKKFQFCTQLQISKTDDLPKIICNNCVGRLEIAYDFCKQAECSDKYLRQVITHQKEENQSALGKQGLYDEMVLEIYRTRIKVEQDDQIEQLTDFELEEVSNVNISPTLEGININCKGTERLTDSVPVYAVVGECGAADKVKIEEIEEADIEKIQETKQINLFTIAKVTSIPKTEFNETNEITGNESCSQEYIESLSGETQIKVEQGDQMKQPTNVKSVKISGTIEEGIQYKGSSSGADLAKIEKLQETIFTIAKVTSIRKNEDKQTDKFECIECGAHFTRKGSLKRHSLIHSGERPSGTSFANESLERHSQIQLGERSYKKGGDQTDKFECIECGSKFTRKGSLKRHSLIHSGERPSGTSPQNKSLKRHSQILLDERSYKSKGDDQTDKCVCMVCGERFTTNGSLKRHSITHSGVRPYKCNLCSRSFALSFNLESHKRLHTGEIGYTCETCGSHFRSKKTLMQHVFIKHRNEKKTEMEINVINQTEQKKQPTQNGTTLAEIIEEGVNFKGTEQQVYTCESKEEEIEEEIIQETKPINDITITEVTSIRKNDDDEQTEQKKQPEQNGTALAETIEGVHLQRQVYTCESEEKEKKEEIDEEKIQETKPINDITITEVISIRKNDEDQTDKIECDLCGARFTKRASLKRHSILHSGARPHKCNFCSRSFAQAYNLATHKRRHRGEKGYTCETCGSLFRSKKTLKQHVFINHGNQKKVEKEINGVKIQETKPINDITIREVFSVRRSSNPTDKIECTLCGAKFTKRASLNRHSLIHSGERPHKCNSCDQSFAQRYNLICHMMTHSAEKPYICETCGLPFRHQNSLNRHVFMKHGTQKKDEMEINGVKIQETKPTSIRKNDKPIDKIECTLCGAKFTKRASLKRHSLIHSGERPHKCNLCDLSFAQKYTLSCHMVRHADEKPYTCKTCGLPFRLQKTLDRHVFMKHENQKKAEVERIILKQKEQYWRKRQLLLARETPEEAALRREKEAAGTRRQRDRAKQMQRSKKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -