Basic Information

Insect: Tipula helvola
Gene Symbol: -
Assembly: GCA_963556165.1
Location: OY744481.1:21501655-21503838[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0044 1.6 12.1 0.5 1 23 129 153 129 153 0.96

2 16 0.00018 0.066 16.5 3.2 1 23 159 181 159 181 0.99

3 16 0.0052 1.9 11.9 0.2 1 23 187 209 187 209 0.98

4 16 0.43 1.6e+02 5.8 0.1 2 13 214 225 213 227 0.89

5 16 0.0022 0.81 13.1 0.9 1 23 324 348 324 348 0.95

6 16 0.0089 3.3 11.1 2.6 2 23 355 376 354 376 0.96

7 16 0.016 6 10.3 1.6 1 20 382 401 382 404 0.95

8 16 0.1 38 7.8 0.2 2 23 409 430 408 430 0.95

9 16 1.8e-05 0.0067 19.6 0.2 2 23 477 498 476 498 0.97

10 16 0.02 7.6 10.0 0.6 1 23 504 526 504 526 0.96

11 16 1.4e-07 5.1e-05 26.3 5.2 1 23 532 554 532 554 0.99

12 16 0.00072 0.27 14.6 1.2 1 23 560 582 560 582 0.97

13 16 0.042 15 9.0 0.3 5 23 594 613 588 613 0.88

14 16 7.3e-05 0.027 17.7 0.4 1 23 619 641 619 641 0.98

15 16 0.00035 0.13 15.5 0.9 1 23 647 669 647 669 0.97

16 16 0.00016 0.059 16.6 2.1 1 23 675 698 675 698 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0044	1.6	12.1	0.5	1	23	129	153	129	153	0.96
2	16	0.00018	0.066	16.5	3.2	1	23	159	181	159	181	0.99
3	16	0.0052	1.9	11.9	0.2	1	23	187	209	187	209	0.98
4	16	0.43	1.6e+02	5.8	0.1	2	13	214	225	213	227	0.89
5	16	0.0022	0.81	13.1	0.9	1	23	324	348	324	348	0.95
6	16	0.0089	3.3	11.1	2.6	2	23	355	376	354	376	0.96
7	16	0.016	6	10.3	1.6	1	20	382	401	382	404	0.95
8	16	0.1	38	7.8	0.2	2	23	409	430	408	430	0.95
9	16	1.8e-05	0.0067	19.6	0.2	2	23	477	498	476	498	0.97
10	16	0.02	7.6	10.0	0.6	1	23	504	526	504	526	0.96
11	16	1.4e-07	5.1e-05	26.3	5.2	1	23	532	554	532	554	0.99
12	16	0.00072	0.27	14.6	1.2	1	23	560	582	560	582	0.97
13	16	0.042	15	9.0	0.3	5	23	594	613	588	613	0.88
14	16	7.3e-05	0.027	17.7	0.4	1	23	619	641	619	641	0.98
15	16	0.00035	0.13	15.5	0.9	1	23	647	669	647	669	0.97
16	16	0.00016	0.059	16.6	2.1	1	23	675	698	675	698	0.97

Sequence Information

Coding Sequence: atgacgtatAACGTGCATAGCATATGCCGCAGTTGTTTACAACAAAGTGATAAAATGATATCCTTATTTGAATATTGCTGCGTGGATATGGATAATTTTCTACTATCGGAATTGTTTGGAAAATGTACACATTTAGATataaataaaaatgataacttGCCCGAACAAATATGTGAACTTTGTCTGGATGAGCTAATTTCGGTAAACCGGTTTcaggaaaaatgtaaaaactctGTTAAGATTCTGAAAGCTGATGGGCCAAATTGTGATTTGGATATTGTTGAAGTGTTTAATGCAGAATATATAACCGAATTAAAAATCGATCCTCAAATAGAAATGGTTACTTTAGTCGATACCCCAATTGATAAGTCAAACAATGTATTCTATAAATGCATGGTCGACGGTTGTAATAAATCCTTTGGATCATTATCGGGATATACAGAACATAAAACGATGCATACTCCAACAGAGGGATACAAATGTGATTattgtgataaaatatttcctCGACAAATTATGAAACTGAACCATCATCGCACCCACACTGTGGATCGTCCATTCAAATGTTCCGTATGTCCAATAGCGAAAACCACTAAATCAGGGCTCCTCAGCCATTTATTAACACATACCCACAAATTACGGTGCGATATTTGCgacatcaattttaaaaatcgtaggATGGAAATTTTCcacatgaaaaataataaaaattgtccaAAACACGTAACCCGACGAGAAACGAACACAAATCAATTAGATAATGAGATGGCTACGGTAAACGCACAAATCGATAAATTAAGATCGAGTAGAAAGCCGAAAAAGGAGAATTCACAAACCCAGTGTACAATTTGTGCATTTGAATGCTTTACAACAGCCAGACTACGAGATCACGCTACAATTCACGTTAAAGCCGAAAACGAGTCGATACCATCTAGTACCAATGCCATTATTGACGAATCCGGTCTCAAATACAAATGTCTCGATAAAAGCTGTGACAAAACGTTTGCGAGTCTAATATCGTATCGAGAACATCAGAAAATCCATGATCCAGATAGTGCCGTGAAATGTGACTACtgtgaaaaaatgttttcgtcGAAGGCCAAACGTGAACCTCATCATCGAACACATCGCGGTGAACGCCCCTACAAATGCAGCGTATGTCCACAAGCAAGAGGTACAAAATCTTCATTGCTAAAACACTTGCTATGCCATGCCCGATCGTTAAAATGTAAACCATGCGCCATTAGTTTTGAGTCATCTCGCTCGTATGTCGCACATTTGAAAATTCACGCTGACGATCCAAATTATGAACCAAATAACGATTCGGATCCCGATGAAGAAGAGCCCGATGAAGATCAGCACAAATTAAAACGACAAATCGAAGAAATTCGATCGAATACTCTGGCccaaaaacgaaatataaatacGAAATGTTCGATTTGCTTACGGGAATTTGCGACGCCGAGTGAATTAAAATCGCACATGGAAGTGCATCAAGATGTTGGCggttatgtatgtacaatttgTAACAAAACTTCGTTAACAAAAGCCGGTTATCGTGAACATATGTTCTTACATGAACCTTATGGTACATTTCAATGCGAACATTGTGATAAGGTATTTTCATCGAGTCATCAATTAAAAGCTCATTTACGTAAACATACCGGTGAAAAACCCTTTACATGTTATATCTGCGGAAAATCTTGTTCCACCGCCAATGTTCTGCTCGTACACAATCGACTACATACCGGTGAAAAGCCGTTTAAATGTATCACCGAAGGATGTGCAGCTGCATTCCGTACAACAAGCAAATTAAATCGACATCAGATCAGTATGCATTCGACTAAACGGCCATACGAGTGTAACGTATgctcaaaaaaatttgcattttccgACGAATATAAAGCGCATGTTGTAACACATTCGGATAAGATGGCGCATGAATGTGGTTCTTGTGGCAAAGGATTTATGAAGGATTACTACTTGAAAGCTCATTTAAGGGTGCATACGGGCGAAAAACCATACACATGTGAGTTGTGTCTTAAATCCTTTCGACTGCGAACATCGTTAAATAGTCATATGAAATTGAAACATGTCAGTGGCGGAGAAAAGAAATGA
Protein Sequence: MTYNVHSICRSCLQQSDKMISLFEYCCVDMDNFLLSELFGKCTHLDINKNDNLPEQICELCLDELISVNRFQEKCKNSVKILKADGPNCDLDIVEVFNAEYITELKIDPQIEMVTLVDTPIDKSNNVFYKCMVDGCNKSFGSLSGYTEHKTMHTPTEGYKCDYCDKIFPRQIMKLNHHRTHTVDRPFKCSVCPIAKTTKSGLLSHLLTHTHKLRCDICDINFKNRRMEIFHMKNNKNCPKHVTRRETNTNQLDNEMATVNAQIDKLRSSRKPKKENSQTQCTICAFECFTTARLRDHATIHVKAENESIPSSTNAIIDESGLKYKCLDKSCDKTFASLISYREHQKIHDPDSAVKCDYCEKMFSSKAKREPHHRTHRGERPYKCSVCPQARGTKSSLLKHLLCHARSLKCKPCAISFESSRSYVAHLKIHADDPNYEPNNDSDPDEEEPDEDQHKLKRQIEEIRSNTLAQKRNINTKCSICLREFATPSELKSHMEVHQDVGGYVCTICNKTSLTKAGYREHMFLHEPYGTFQCEHCDKVFSSSHQLKAHLRKHTGEKPFTCYICGKSCSTANVLLVHNRLHTGEKPFKCITEGCAAAFRTTSKLNRHQISMHSTKRPYECNVCSKKFAFSDEYKAHVVTHSDKMAHECGSCGKGFMKDYYLKAHLRVHTGEKPYTCELCLKSFRLRTSLNSHMKLKHVSGGEKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01460505;
90% Identity: -
80% Identity: -