Thel119978.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- -
- Assembly
- GCA_963556165.1
- Location
- OY744483.1:303451043-303452917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.7e-06 0.0018 21.4 0.2 1 23 142 164 142 164 0.97 2 14 3.7e-05 0.014 18.6 2.4 2 23 169 190 168 190 0.96 3 14 3.4e-06 0.0013 21.9 1.3 1 23 195 218 195 218 0.97 4 14 3.8e-05 0.014 18.6 3.5 2 23 225 246 224 246 0.96 5 14 0.00074 0.28 14.5 6.1 1 22 329 350 329 350 0.96 6 14 0.034 13 9.3 0.3 2 23 366 387 365 387 0.97 7 14 1.3e-05 0.005 20.0 1.4 1 23 393 416 393 416 0.97 8 14 0.00033 0.12 15.6 0.7 3 23 428 448 426 448 0.94 9 14 2e-05 0.0076 19.5 0.9 1 23 454 476 454 476 0.96 10 14 3.6e-05 0.014 18.7 0.1 1 23 481 503 481 503 0.98 11 14 1.8e-05 0.0066 19.6 0.7 1 23 508 530 508 530 0.99 12 14 3.3e-05 0.012 18.8 1.5 1 23 536 559 536 559 0.98 13 14 3.5e-05 0.013 18.7 0.8 3 23 567 588 565 588 0.96 14 14 0.012 4.6 10.7 2.1 1 13 594 606 594 610 0.90
Sequence Information
- Coding Sequence
- ATGAATCCAATCTCGTCACAAAGTGAAGTTCGAGTGTCGGAAATTTTTGAACAACTTACGGGCATTGATCTAAAAGCTGATCTAAATGTgtctaaatatttatgtttaacatGTTTGGAACGATTGTTTAATGCGTATGAATTTGTTGAGTTATGCAAAATTTCGGATGTTGAATTATCGACACATAAAATAGGGACGAATATATTAGAAgttgaaaattttgtagatcTAGTTGCAACGCCGCCAGCTGAAGACCCCCTCGAAGATCAATTGACAAGTGATAATGATGATATCGGTGATTCTTATAGCGATAATAATGATGATGACAGTGATGATCCCGATTTTGAAGTACCCATCCAAGTAAATAATCCACTGGATGAGGATAGGAAAAAGTCGTCAAAATCAACTGGACATAATAAAGTATTCGATTGTTTGAAGTGTAATGAGGTGTTCAGCGATTCAGCCAATTTAAAGTGGCACGAACGAGTTCACGAAGGTAACTGGTCGTGTACCGAATGTGATAAAGTTTTATCGACCAAATATACGTTTCGGCACCACATGATGCTACATATGGGGAAACCATTTGAATGTACACTGTGTTCCTGGCGGTATTCACGCAGCAGTGATTTAAATAGACATACTAGAATTTATCATATGGCAGGGAAAGCTATCGAATGTGATATATGTACCAAGAAGTTTTACACTCGGAGTCATTTGAAATCGCATAAACTGAGTCATTTgaaaaagaaacgaaaaaagaATGAATGTGAAAATTGGAGCAATGATTCTGAGATTATTGATCAAAGcgtgaagccaaacgaaaatgaaaagaaaaatgtcGCTACGGTTAAGTGTGAGACAGAAAAAATATCAGAAACTGAAAATTCTCAATTTAATACTATTGATAAAAATGTTCCTAGCGAACCGCCTTATTTAGAcgtaaaaacagaaaattcctCAAGATTTGATACAATTTCCAAATATTATAgatgcaaaaaatgttttaagaaattCCGACACCGAAATAACTATTTAAGACATTTGAAGATGATAAATAATTGTCAGGTCGATATAAAATGCAGGAACAACccacagaaatgtcaatattGTACGGTTATATTAGATAACGTGACCGCTCTCAGAAAACATTTAGAAACACATCTGGATTATCAACCATTTCGATGTAAAATATGCGATAAGAATTATAAAACGTGGTTCAAATTAGCCGTACATACTCGACAAATTCatttaatgaagaaaaaataTCACAGCAAACATTTGTGTACGGTGTGTGGCCGAGGTTTTCGATCAGCCAAATTGCTAGAAGAACACTATTTTGTTCATGAAGGTATTCGTAATTATAAATGTGAATATTGTGACCGGGCGTTTTATAGTAAAACAGGGCTAAAACAACATTCGGCCATACATACCCGAGATGTATTTCAATGCAGTGAATGCGGTAAGATATTGGCGGACAAAGTTACACTTCggaatcatttaacaattcattttggtaaaaaatttaaatgtctaATGTGTGAGAAATTATTTCCTAATGTATCGACGCTCAATCGACACATGAAAATTCATCGAGGCGAACGTAATTTCCAATGCGATCAATGCTCGAAACGTTATATGCGAAGGGGATACTTGAACGAACATATAAGAAAGATACATGAGAATCCAAGGAAGATGGCATGCGAGGAATGTGGTATGGAATTTAATCATCGGGCATCTCTAAACAAACATCGGCGTTTGGAGCATACAGAAAAACCGATATTTCGATGTAATGAGTGTGGAAAATGTTTTGGAAGGAAAGCAAGGTATGCTAATTTAGAATATTGGTCCCGTTCAAATTCATTCTTAATGGACTAA
- Protein Sequence
- MNPISSQSEVRVSEIFEQLTGIDLKADLNVSKYLCLTCLERLFNAYEFVELCKISDVELSTHKIGTNILEVENFVDLVATPPAEDPLEDQLTSDNDDIGDSYSDNNDDDSDDPDFEVPIQVNNPLDEDRKKSSKSTGHNKVFDCLKCNEVFSDSANLKWHERVHEGNWSCTECDKVLSTKYTFRHHMMLHMGKPFECTLCSWRYSRSSDLNRHTRIYHMAGKAIECDICTKKFYTRSHLKSHKLSHLKKKRKKNECENWSNDSEIIDQSVKPNENEKKNVATVKCETEKISETENSQFNTIDKNVPSEPPYLDVKTENSSRFDTISKYYRCKKCFKKFRHRNNYLRHLKMINNCQVDIKCRNNPQKCQYCTVILDNVTALRKHLETHLDYQPFRCKICDKNYKTWFKLAVHTRQIHLMKKKYHSKHLCTVCGRGFRSAKLLEEHYFVHEGIRNYKCEYCDRAFYSKTGLKQHSAIHTRDVFQCSECGKILADKVTLRNHLTIHFGKKFKCLMCEKLFPNVSTLNRHMKIHRGERNFQCDQCSKRYMRRGYLNEHIRKIHENPRKMACEECGMEFNHRASLNKHRRLEHTEKPIFRCNECGKCFGRKARYANLEYWSRSNSFLMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01460476;
- 90% Identity
- -
- 80% Identity
- -