Thel019967.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- -
- Assembly
- GCA_963556165.1
- Location
- OY744481.1:159781188-159793058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.2e-05 0.012 18.8 0.2 2 23 175 196 174 196 0.96 2 16 0.41 1.5e+02 5.9 4.6 2 23 199 217 199 217 0.89 3 16 0.0033 1.2 12.5 0.8 1 23 223 245 223 245 0.94 4 16 4.6e-05 0.017 18.3 2.9 1 23 251 273 251 273 0.98 5 16 2.8e-05 0.011 19.0 1.6 1 23 279 301 279 301 0.98 6 16 7.3e-08 2.7e-05 27.1 0.4 2 23 308 329 308 329 0.97 7 16 0.00031 0.11 15.7 2.0 1 23 335 357 335 357 0.98 8 16 0.00012 0.045 17.0 3.5 2 23 493 514 492 514 0.98 9 16 0.27 1e+02 6.5 1.9 2 23 517 535 516 535 0.78 10 16 2.7e-05 0.01 19.0 0.6 1 23 541 563 541 563 0.98 11 16 5.7e-06 0.0021 21.2 3.0 1 23 569 591 569 591 0.98 12 16 3.4e-05 0.013 18.7 0.6 2 23 598 619 597 619 0.98 13 16 3.3e-05 0.012 18.8 1.4 3 21 627 645 625 647 0.94 14 16 5.9e-05 0.022 18.0 0.3 1 23 653 675 653 675 0.98 15 16 1e-05 0.0038 20.4 2.8 1 23 681 703 681 703 0.99 16 16 0.00016 0.06 16.6 5.2 1 23 709 732 709 732 0.97
Sequence Information
- Coding Sequence
- atggcaatatttactttaaagcaaaaaatatttattgtaaaacgcTATTACCAAACAGGTAATTCAACACAAATAGTTCAACATGAGTTTCCCAGTGAGTTTAATCAATATTTACCACCTACGGATGATAATATTCAAGAGTTGGTCCATTTATTCGAAGAATTCGGCACCGTAATTAAACTCGACGATGGAGAAATAGAAGCAATTTATGAAACGCGTAACAGTTGTTTGGACGATGCCAATAAATTCCGTGATGCAGGTGAAATGGACGTCAAAGTGGAGCCAACGTTAACATTTTATGAAACTCGGGATTTGGTCACAGACGAAGAAGATGTTCTAAATATTTCAGTTAATAaagatcaaaataattttagcagtGATTATAGCTGTAGTGATGAAGAGGACGATGATGATGACGAAATGGATAAATCATATTCAACAAGTGATGAGGTAAAGGAgcaactaaataatttaaaggaagatcatgaaaaacttgaaaataacaaaacaaaattgatatTAATATGTGAAGAGTGCGGTAAGGAATTTGATCGACGGGCTCGCTATTTACGACATATGAATGTCCATAAAAATCGTTGCGagatttgtggtaaaaaatttcACGATCGGGAGAAACATATGAAAAAGCACACAGgagaaaaaacgtttttatgCTCGCAATGTGATGCCagatttattaatataagtagGTTAAATCATCATATGATCGGACATTCAACAGATCGTCCGTTTGAATGTGACGTTTGTCATAAGACATTTAAATCGACCGATGGATTGCGTGGCCATAAAAAAACTCATTCTACTGAACGACCACATAAGTGTGATCAATGTGGTaaaggatttttaaataaaggtgATCTGACAAAACATCAAAATGTGCACACGGGACGAAAGCCAGCTGTGTGCCAAGTATGCGGTAAAGGTTTCTCATCAAACGACTCACTTAAAGTTCATATGAGAACTCATACTGGGGAAAAACcgtacgaatgtcaatactGCGGGAAACAGTTTAGCTGTTCGAACGTGCTAAAAATACACATTAGAGTTCACACAGGAAATTCCACAGATTCCGTTCAAATTGAATTTCCAAGTGTATTTAGTGACCACAGCCCGCCATTATCATGCGATAGCATTATAGAGTTAGTAAATTTATTCGAGGAATTTGGAACTGTCTATCCTAGTCCAAGAAAACAGGAATTGATCTTGGATGATTTCAAAGGCGAGGAATTCCAAATAAAGGTTGAaccactaaattttaattacaatgctgatgaatttgttgatgaaaatgaaacGCATAGTGAAGAAGACGAGGATGATGTCAACAAGCTTGATACCGAATTCACTCTATTTCCTGAGGACCTTAATGACAACCAAATTAGTGatgagataaaaattgaacctACGGTAAAAACCGATCTGGAGAATGAAGAAAATACTATTAAATTAgcacaaaaatgtaaaatttgccaTAAGGAATTTGATAAGGAAATGTACCTAAACCGGCATATCAAGTCACACGGCAAAACATGTGAAATATGCGGCAAAAAATATCAGAATCGTGAGAATCACATGAAAAAACATTCGggtgaaaaatcatttcaatgtACAGAATGTGGAGCTCGATTCATAAATATGAGCCGACTAAATAATCACATGACATCACACTCAGAAGAGCGGCCATTTGAATGCACTATATgccaaaagaaatttaaatcgcGTGAACGTTTACGCGTACATCAGAAGACACACAATACGGACCGACCCAATAAGTGTGAAGTGTGTGGAAAaggatttttacaaaaatacgatcttaaaaaacatttaaacgtGCATACGGGCGAAAGGAAATCAATATGTAGTATATGCGGTAAATATTTTGTCTCGAATGACTCGCTAAAGATTCATATGCGGTGTCACACCGGAGAAAAACCATACAATTGCAGTTATTGTGAGAAAAATTTCAGTTCCGCGGGAGTTTTAAAAATCCACGAACGAATTCATACGGGTGAAAAACCTTATAAATGCAAATATTGtgataaagaattttatgattcGTCAACAAGGCGGGCACACGAACGAACACACACGGGAGACTATCCTTATAAGTGTACACTTTGTGGTAAAGCTCATAATCATCCCAGTAATTTGAAATCACATATGAGACACGCTCACCGAGaagaacaatttataaattttaaataa
- Protein Sequence
- MAIFTLKQKIFIVKRYYQTGNSTQIVQHEFPSEFNQYLPPTDDNIQELVHLFEEFGTVIKLDDGEIEAIYETRNSCLDDANKFRDAGEMDVKVEPTLTFYETRDLVTDEEDVLNISVNKDQNNFSSDYSCSDEEDDDDDEMDKSYSTSDEVKEQLNNLKEDHEKLENNKTKLILICEECGKEFDRRARYLRHMNVHKNRCEICGKKFHDREKHMKKHTGEKTFLCSQCDARFINISRLNHHMIGHSTDRPFECDVCHKTFKSTDGLRGHKKTHSTERPHKCDQCGKGFLNKGDLTKHQNVHTGRKPAVCQVCGKGFSSNDSLKVHMRTHTGEKPYECQYCGKQFSCSNVLKIHIRVHTGNSTDSVQIEFPSVFSDHSPPLSCDSIIELVNLFEEFGTVYPSPRKQELILDDFKGEEFQIKVEPLNFNYNADEFVDENETHSEEDEDDVNKLDTEFTLFPEDLNDNQISDEIKIEPTVKTDLENEENTIKLAQKCKICHKEFDKEMYLNRHIKSHGKTCEICGKKYQNRENHMKKHSGEKSFQCTECGARFINMSRLNNHMTSHSEERPFECTICQKKFKSRERLRVHQKTHNTDRPNKCEVCGKGFLQKYDLKKHLNVHTGERKSICSICGKYFVSNDSLKIHMRCHTGEKPYNCSYCEKNFSSAGVLKIHERIHTGEKPYKCKYCDKEFYDSSTRRAHERTHTGDYPYKCTLCGKAHNHPSNLKSHMRHAHREEQFINFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -