Thel120522.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- -
- Assembly
- GCA_963556165.1
- Location
- OY744483.1:308028547-308039842[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00034 0.13 15.6 0.2 1 23 209 231 209 231 0.97 2 18 3e-07 0.00011 25.2 0.9 1 23 237 259 237 259 0.99 3 18 0.00024 0.088 16.1 4.6 1 23 265 287 265 287 0.98 4 18 0.00019 0.072 16.4 0.2 1 23 293 315 293 315 0.97 5 18 0.00017 0.063 16.6 4.6 1 23 321 343 321 343 0.98 6 18 0.0089 3.3 11.1 0.5 1 23 349 371 349 371 0.94 7 18 0.00024 0.09 16.1 0.2 5 23 381 399 380 399 0.96 8 18 0.023 8.4 9.9 3.9 1 23 405 428 405 428 0.94 9 18 4.8e-05 0.018 18.3 0.8 2 23 517 538 516 538 0.95 10 18 1.6e-05 0.0061 19.8 2.1 1 23 544 566 544 566 0.99 11 18 0.00027 0.1 15.9 2.5 1 23 572 594 572 594 0.98 12 18 0.00014 0.051 16.8 7.7 1 23 779 801 779 801 0.98 13 18 1.3e-06 0.0005 23.2 1.4 1 23 807 829 807 829 0.97 14 18 0.0091 3.4 11.1 1.0 1 23 835 858 835 858 0.91 15 18 0.73 2.7e+02 5.1 3.3 1 21 872 892 872 893 0.95 16 18 0.0011 0.41 14.0 1.0 1 23 1250 1272 1250 1272 0.94 17 18 9.3e-06 0.0035 20.5 4.6 1 23 1278 1300 1278 1300 0.99 18 18 1.3e-05 0.0049 20.0 1.1 1 23 1306 1329 1306 1329 0.96
Sequence Information
- Coding Sequence
- atgagcttaaagattgataaaaataattgtcgAGTTTGTATGAAAACTACTGATGGAAGAATATCAATTTATTCGGATAGCGaaacaggaaaaaaattccaGTTTTGTACACAATTAGAAATTTCAAAAACTGATGGTTTACCAAAAACGATATGTAATAAATGTGTAGAGCGGTTGGAAGTCGCTTACGATTTTCGTAAACAGGCTGAGTATTCAGATAAGTATTTAAGGCAGGGTTTAATACATGTTTTGGAGGAAGTGAACCAATCGACTCAGGCGAAACGGAGTCTGAACGATGAAATGGTTTTAGACATTAACAATACACGGATCAAAGTGGAACAAATCGAACCGCTGACCGATGTTATACCGGAACAGATTTCAATTGTAAATATTCCACCAGAGATAATAGAAGAAGGCATTCATTATAAGGGAGGGAAACGGCAGGCTCGTAAAGTTCCTGTGTGCGCTGCTTACGAGGAATATAACGCTAACACGTTTGAATCTGATTTTGTTAAAACAGAACAGATTGAAGAGGAAACAATACAAGAGACTAATCCAATAAACTTATTCACAATAACGGAAGTTACTTCCTTTCATAAGAAGGACGGTGACCAAACCGACAAGTACGAGTGCTTGGTATGCGGAGCCCTTTTTACTCGAAATGGATCACTCAAGCGACATTCACTAATCCATTCGGGTGAGCGACCTTACAAGTGTAAGATTTGTGATCGACGCTTTACTCAGAGCAATGGCCTAACAGCCCATTTACGAATTCATACGGGCGACCGACCATTCAAGTGTAAGTTTTGTGATCAAGCCTTTACTCAGAGCAATTGCCTAACATCCCATATGGTAAAACATACGGGAGAAAAACCTTACACTTGCGTTGTATGCGATGCCCGTTTCGCACGAAACGGAACACTCAAGCGGCATTCACTAATCCATTCAGGTGAGCAAccatataaatgtaatttttgtggTCGAGGCTTTACTAAGAGCAGTTGCCTAGCATCTCATAAGAGACAACATACCGCAGGAAAACCTTACAGTTGCATCGTATGCGGTGCCCGTTTCAAGCTAAAAGAATCGCTCAAGCGGCATTCACAAATCCATTTGGATGAGCGATCATACAAGAGTAATTTATGTGGGCGAGGCTTTAACCAGAGCAGTAACCTAGCAGCCCATAAGAGGCGACATACGGGAGGAAAACCTTACACTTGCGAAACTTGTGGCTCACATTTCAGATTCAAGAAAACTTTAATGCAGCACGTTTTCATCAAGCACGATCACCAAAAAAAAGCTGAAGTGGAAATGCAAAGAGAGCGAAAAAGACAACCTACGCGGAATGGAACTGCTTTAGCAAAGACAATTGAAGAAGAAGTTCACTATAAGGGAACAGAACGACAGGTTTATACTTGTGAATCTGATATAGTAAAAACAGAAGAGTTGGAAGAGGAAAACCTACAAGAAACTAAACCAATAAACGTATTCACAATAACGGAAGTTACTTCTGTTCGTAAGAAGGAGGGCTACAAAACCGACAAGTGCGTGTGCATGGTATGCGGTGCCCGTTTCACAACAAATGGATCACTCAAGCGGCATTTACTAATCCATTCAGGTGTGCGACCGTTCAAGTGTAATTTATGTAGTCGACGCTTTACTCAGAGCAATGGCCTAGCATCTCATATGAAACGGCATACGGGTGAAAAACCTTACAAGTGCAATATTTGTGGCTCGATTTTTCGATTCAGGACAAGTTTAAACCGGCATTTTTTGAAGCACGAAAAGCTAAAAATTACAGAAAACGATGAATTACCAAAAGGATTATGTAATAAATGTGTTGGGCGGCTGAAAGTCGCTTACGATTTCCGAATGCAAGCCGAGCAATCAGATAAATATTTGAGGCAGTCCAAATCACATTTTACAGAATACGGCAATACGCTAATTGTAACCGATGATTTTATGAAGAGGGCCAAAATTGAAATGGGCCAAATTGATAAAATCGAACAGCTGACGACCGATCATTATCTTCACAAAAATAAAGAGGAAAATCCTATTTTAAAAGCGCAAAATACTCTTCCCTTAGCTGCGAACGTCTCAGAGCACCTAAATgtattttcgagcttatctaaTTCACAAGCAAACTCTTCAATTTATGTTGAAGAGGAGTCTCTTGATATCAAAGTTGAAGCATTTGATGGTTTCACGAAAGAAGCGGATCATGAAAAAGCGGGACAAGGActcgacattttttttaactctaaATCGAAACCCGATTATAACACGGAAAACGACGACAACGCTAAACGAGCTGACCTGGATACTAGCAAATTATACCACTGCACAAATTGCAGTAAAACATATTACACCAAAGCCCATTTGCAACGCCACTTAAAAACCCATAGCGGTGTTAAACCTTTCGAGTGCACCATATGTGATACTCGGTTCACTCAGAAGGTATCTCTGAAGCGGCATATGGGTAGGCATATGGAGGAAAAGCCCTACAAATGTGAAACGTGTAACGCATCATTTCTACAGAAGTACTATTTAGAGCGACATGCCCTGTTCGttcataatattattaaagaaaaaagaCAAACCATAGAGGAGACCCACGAATGTGAAACATGCCATCGATTATTCACGTGTAAGGCGTCGCTAGCGAAACACTTGAAATGGTTTATTAAGCAAAAGCAATCGTGCGTTGAGGGTCAACTGTGCTTAAGTTGCAACACGGGACTTTCTTCAAAGAAGCAACGATGCAATCAAGCATTCCCAACCATGGAGCACTTTAATGGTCACGAGTCTTGCCACTCCGGTGAAAACCAACAAAAAGCAGAAGTagaattaatacttttaaaggAAAATGAACGAAAAAGACGTCAGCGACAGTTGAAGCTTGCTAGAGAGACTCCTGAACAAGCGGCATTGAGAAGAGAGAAACAAGCTGCCCAAATGCGCCGCTCTCGTGCAAAACGAGCAAAGATTTTAAAAACTGATGATTTaccaaaaacaatttgtaataaatgtgTTGGACGGTTGGAAGTTGCTTACGACTTCCGTAAACAGGCCGAGTATTCAGACAAATATTTGAGACAGGTCATAACACATGATAAGGAAGAACTGAAACAATCGGCACAGGGGAAACTCAGTCTGTATGATGAAATGGTTTTAGAAATTTATCGTACGAGGATCAAAGTAGAGCACGATCTGAACGATGCTCAAATCGAGCAGGTGGCCAATTTTGAATCGGAAGAGGTTTCGATCGTAAATATCCCACCCACAATAGAAGAAGGGATTAACTATCAGGGAACAGAACGATTGACTGATAGTGCAGCTGATAAAGTAAAAATAGAAGAGATTGAAAAGGCCGACATTGAAAAAATACAAGAgactaaacaaataaatttattcacaatagcGAAAGTTACCTCTATTCGTAAAACTGAAGGCAACGAAGCATGTGAGATTACTGGAAACGAGAGATGGAGGCAAGAAGACATCGAATCACTACTAACTGGCAATACGCAGATCAAAGTAGAACAAGGCGAACAAATGAAGCAGCCGACCAAAGTTAAATCGGCAAACATTTCAGAGACAATAGAAGAGGGCATTCAGTATAAGAGAAGCACGTATGGAGCTGACCGATTAGCAAAAATTGAAGAAACTGAAAAAATGCCAAAGACAATATTCACAATAACGAAAGTTACTTCTATTCGTAAGATTGAGGATGACCAAACCGATAAGTTCGAATGCATCGAATGCGGTGCCCATTTCACACGAAAAGGATCACTCAAGCGACATTCACTAATTCATTCGGGTGAGCGGCCATATAAGTGTAATTTATGTGGTCGAAGCTTTACTCAGAGCAATTGCCTATCATCCCATTTGAGGCGACATACGGGAGAAAAACCTTACACTTGTGAAATTTGTGGCTTCCCTTTCCGATACCAGAGAAGTTTAAAGCGGCATGTTTTGAGCAAAcacgaaaatcaaaaaaaagctgaagtgaaaataaaagttttaaagcaTAACGAGCAATGTAGGCGTCAGCGACAGTTGCTGCTTGCTAGAGAGACACCTAAAGAAGCAGCTTTGAGAAGAGAGAAAGAAGCTGCAAGAACAAGAAGGCAACGCTATCGAGCTAAACAGGCAAAAGTTCAATGA
- Protein Sequence
- MSLKIDKNNCRVCMKTTDGRISIYSDSETGKKFQFCTQLEISKTDGLPKTICNKCVERLEVAYDFRKQAEYSDKYLRQGLIHVLEEVNQSTQAKRSLNDEMVLDINNTRIKVEQIEPLTDVIPEQISIVNIPPEIIEEGIHYKGGKRQARKVPVCAAYEEYNANTFESDFVKTEQIEEETIQETNPINLFTITEVTSFHKKDGDQTDKYECLVCGALFTRNGSLKRHSLIHSGERPYKCKICDRRFTQSNGLTAHLRIHTGDRPFKCKFCDQAFTQSNCLTSHMVKHTGEKPYTCVVCDARFARNGTLKRHSLIHSGEQPYKCNFCGRGFTKSSCLASHKRQHTAGKPYSCIVCGARFKLKESLKRHSQIHLDERSYKSNLCGRGFNQSSNLAAHKRRHTGGKPYTCETCGSHFRFKKTLMQHVFIKHDHQKKAEVEMQRERKRQPTRNGTALAKTIEEEVHYKGTERQVYTCESDIVKTEELEEENLQETKPINVFTITEVTSVRKKEGYKTDKCVCMVCGARFTTNGSLKRHLLIHSGVRPFKCNLCSRRFTQSNGLASHMKRHTGEKPYKCNICGSIFRFRTSLNRHFLKHEKLKITENDELPKGLCNKCVGRLKVAYDFRMQAEQSDKYLRQSKSHFTEYGNTLIVTDDFMKRAKIEMGQIDKIEQLTTDHYLHKNKEENPILKAQNTLPLAANVSEHLNVFSSLSNSQANSSIYVEEESLDIKVEAFDGFTKEADHEKAGQGLDIFFNSKSKPDYNTENDDNAKRADLDTSKLYHCTNCSKTYYTKAHLQRHLKTHSGVKPFECTICDTRFTQKVSLKRHMGRHMEEKPYKCETCNASFLQKYYLERHALFVHNIIKEKRQTIEETHECETCHRLFTCKASLAKHLKWFIKQKQSCVEGQLCLSCNTGLSSKKQRCNQAFPTMEHFNGHESCHSGENQQKAEVELILLKENERKRRQRQLKLARETPEQAALRREKQAAQMRRSRAKRAKILKTDDLPKTICNKCVGRLEVAYDFRKQAEYSDKYLRQVITHDKEELKQSAQGKLSLYDEMVLEIYRTRIKVEHDLNDAQIEQVANFESEEVSIVNIPPTIEEGINYQGTERLTDSAADKVKIEEIEKADIEKIQETKQINLFTIAKVTSIRKTEGNEACEITGNERWRQEDIESLLTGNTQIKVEQGEQMKQPTKVKSANISETIEEGIQYKRSTYGADRLAKIEETEKMPKTIFTITKVTSIRKIEDDQTDKFECIECGAHFTRKGSLKRHSLIHSGERPYKCNLCGRSFTQSNCLSSHLRRHTGEKPYTCEICGFPFRYQRSLKRHVLSKHENQKKAEVKIKVLKHNEQCRRQRQLLLARETPKEAALRREKEAARTRRQRYRAKQAKVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -