Thel010353.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- -
- Assembly
- GCA_963556165.1
- Location
- OY744481.1:79936601-79946709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2e-06 0.00076 22.6 4.1 1 23 109 131 109 131 0.98 2 23 0.00028 0.1 15.9 0.6 1 23 137 159 137 159 0.99 3 23 0.00018 0.067 16.5 3.4 1 23 165 187 165 187 0.98 4 23 3.6e-06 0.0013 21.8 0.4 2 23 194 215 193 215 0.97 5 23 8.7e-06 0.0033 20.6 1.6 2 23 222 243 221 243 0.96 6 23 0.00012 0.046 17.0 2.7 1 23 249 271 249 271 0.96 7 23 0.22 83 6.7 1.1 1 13 277 289 277 290 0.88 8 23 1.8e-06 0.00067 22.8 4.3 1 23 392 414 392 414 0.98 9 23 0.00039 0.15 15.4 0.3 2 23 421 442 420 442 0.98 10 23 0.063 23 8.5 9.0 1 23 448 470 448 470 0.98 11 23 0.00027 0.1 15.9 0.8 2 23 477 498 476 498 0.97 12 23 3.9e-06 0.0014 21.7 1.2 2 23 505 526 504 526 0.96 13 23 4.6e-05 0.017 18.3 2.6 1 23 532 554 532 554 0.96 14 23 0.3 1.1e+02 6.3 5.4 1 23 560 582 560 582 0.95 15 23 0.00041 0.15 15.4 4.2 1 23 588 611 588 611 0.97 16 23 2e-06 0.00076 22.6 4.1 1 23 715 737 715 737 0.98 17 23 0.00028 0.1 15.9 0.6 1 23 743 765 743 765 0.99 18 23 0.00018 0.067 16.5 3.4 1 23 771 793 771 793 0.98 19 23 3.6e-06 0.0013 21.8 0.4 2 23 800 821 799 821 0.97 20 23 8.7e-06 0.0033 20.6 1.6 2 23 828 849 827 849 0.96 21 23 0.0003 0.11 15.8 2.8 1 23 855 877 855 877 0.96 22 23 0.088 33 8.0 5.2 1 23 883 905 883 905 0.97 23 23 1.8e-05 0.0066 19.6 3.5 1 23 911 934 911 934 0.97
Sequence Information
- Coding Sequence
- atgatttttgaaaaagtggaacCTACACTGTTATTAGATATTAAGGCAGAAGAAAATGAACCACCTGAAAATTTTCCTCGGCCCGAAGACGACAGTATGGAAATTAAAGTGGAAccaattttactatttaatcAATTCAACGATGTCGAAGGTTATTCCATTAAAGAGGAGCATGCTTATTGTAAAGTTAATAACGAAGATGATCATGTTTTAAATACCTCAGATGAAGAAACGGAAAATTCGAATACTGATGAAGAATATAACGAGATCATCCCAAAAAAAGAGGCGCTTGATGATACAActtctgaagaaaaaaaaaaaaattataaatgtaatgtttgcgataaaaaatttggaagacAGCAGCATTTAAAACGTCATCTCAATTTGCACACGGGTGAAAAGTCATTTCAGTGCCAACAATGTGGTGCACAGTTTATCGATATGACGAGACTAAATAATCACATTAAAACACATTCAGATGAGTGTCCGTTTGAATGCGACATATGccataaaacttttaaattgcgGGAGAGGCTTCGCGTCCATAAAATGACTCACATAGTTGATCGACCTATTAAATGCGAGGTATGCGGTAAAGGATTTTTTTACAATGGTAAGCTGACAAATCACATGAGAATACACACGGGCGAGAAAACATGTGTTTGCTATTTTTGTGGTAAATCTTACGCTTCTAATGAAACTTTACGAGTTCATATTCGAACACACACCGGTGAGAAGCCGCATGCATGCACATTTTGTACCAGGAAATTTAATTCATCGGGGAATTTGAATATTCACACTAGAATTCACACAGGTGAAAAACCTTACAAATGCCAATATTGTGAAAAAGCGTTTCATGATTCGgAACGTACACTGTTATTAGAAATTAAGGCAGAAGAAGATGAACCACCTGAAAATTTTCCTCAACCCGAAGACGACACTATGGAAATTAAAGTGGAACCAATTTCactattttatcaattaaatgaTGTCGAAGATCATTCCATTAAAGAGGAGCATGCTTATTGTAAAGCAAATAACGAAGATGATCATGTTTTAAAAACCTCAGATGAAGAAACGGAAAATTTGCGTACTGATGAAGAATATGACGAGAGCATCCCAAAAGAAGAGGCGCTTGATGATACAacttccgaagaaaaaaaaaaaagttataagtgTAATGTTTgcgataaaaaatttgtaagaaagcagcatttaaaaaatcatcttaATTTGCACACGGGTGAAAAGTCAAGTCAGTGCCCACAATGTGGTGCACAGTTTATCGATATGAGGAAACTAAATTATCACATTAAAACACATTCAGATGAGCGTCCGTTTGAATGCGACATATGccataaaacttttaaaatgcgCGTGAATCTTCACTGCCATAAAAAGACTCATATAGTTGATCGACCTATCAAATGCGAGGTATGCGGTAAAGGATTTTTACACAATGGTAGGCTGACAAGTCACATGAGAATACACACGGGCGAGAAAACATGTGTTTGCTATTTTTGTGGCAAATCTTTCGCTTCTAATGAAACTTTACGAGTTCATATTCGAATACACACCGGTGAGAAGCCGCATGCATGCACATTTTGTAACAGGAAATTTAATTCATCGGGGAATTTGAATATTCACACTAGAATTCACACAGGTgaaaaaccttacaaatgtcAATATTGTGAAAAAGGGTTTCATGATTCGGTTTCTTGTAGAAAACACGAAACTGTGCACACCCGTAATTATCCGTTTAAATGTAAACTTTGTGGAAAAGGTCATAGTCAACCGAGTAAGTTAAAACAACATATGCGGCATGCACATCAAgaacCTACACTGTTATTAGATATTAAGGCAGAAGAAAATGAACCACCTGAAAATTTTCCTCGGCCCGAAGACGACAGTATGGAAATTAAAGTGGAAccaattttactatttaatcAATTCAACGATGTCGAAGGTTATTCCATTAAAGAGGAGCATGCTTATTGTAAAGTTAATAACGAAGATGATCATGTTTTAAATACCTCAGATGAAGAAACGGAAAATTCGAATACTGATGAAGAATATAACGAGATCATCCCAAAAAAAGAGGCGCTTGATGATACAActtctgaagaaaaaaaaaaaaattataaatgtaatgtttgcgataaaaaatttggaagacAGCAGCATTTAAAACGTCATCTCAATTTGCACACGGGTGAAAAGTCATTTCAGTGCCAACAATGTGGTGCACAGTTTATCGATATGACGAGACTAAATAATCACATTAAAACACATTCAGATGAGTGTCCGTTTGAATGCGACATATGccataaaacttttaaattgcgGGAGAGGCTTCGCGTCCATAAAATGACTCACATAGTTGATCGACCTATTAAATGCGAGGTATGCGGTAAAGGATTTTTTTACAATGGTAAGCTGACAAATCACATGAGAATACACACGGGCGAGAAAACATGTGTTTGCTATTTTTGTGGTAAATCTTACGCTTCTAATGAAACTTTACGAGTTCATATTCGAACACACACCGGTGAGAAGCCGCATGCATGCACATTTTGTACCAGGAAATTTAATTCATCGGGGAATTTGAATATTCACACTAAAATTCATACAGGTgaaaaaccttacaaatgtcAATATTGTGAAAAAGCGTTTCATGATTCGGTTTCTTGTAGACAACACGAAAAGGTGCACACCCGTAATTATCCGTATAAATGTAAACTTTGTGGGAAAGCTCATAGTCAACCGagtaatttaaaacaacatatGCGGCATGCACATCAAGAAGTGCAAGCCTAA
- Protein Sequence
- MIFEKVEPTLLLDIKAEENEPPENFPRPEDDSMEIKVEPILLFNQFNDVEGYSIKEEHAYCKVNNEDDHVLNTSDEETENSNTDEEYNEIIPKKEALDDTTSEEKKKNYKCNVCDKKFGRQQHLKRHLNLHTGEKSFQCQQCGAQFIDMTRLNNHIKTHSDECPFECDICHKTFKLRERLRVHKMTHIVDRPIKCEVCGKGFFYNGKLTNHMRIHTGEKTCVCYFCGKSYASNETLRVHIRTHTGEKPHACTFCTRKFNSSGNLNIHTRIHTGEKPYKCQYCEKAFHDSERTLLLEIKAEEDEPPENFPQPEDDTMEIKVEPISLFYQLNDVEDHSIKEEHAYCKANNEDDHVLKTSDEETENLRTDEEYDESIPKEEALDDTTSEEKKKSYKCNVCDKKFVRKQHLKNHLNLHTGEKSSQCPQCGAQFIDMRKLNYHIKTHSDERPFECDICHKTFKMRVNLHCHKKTHIVDRPIKCEVCGKGFLHNGRLTSHMRIHTGEKTCVCYFCGKSFASNETLRVHIRIHTGEKPHACTFCNRKFNSSGNLNIHTRIHTGEKPYKCQYCEKGFHDSVSCRKHETVHTRNYPFKCKLCGKGHSQPSKLKQHMRHAHQEPTLLLDIKAEENEPPENFPRPEDDSMEIKVEPILLFNQFNDVEGYSIKEEHAYCKVNNEDDHVLNTSDEETENSNTDEEYNEIIPKKEALDDTTSEEKKKNYKCNVCDKKFGRQQHLKRHLNLHTGEKSFQCQQCGAQFIDMTRLNNHIKTHSDECPFECDICHKTFKLRERLRVHKMTHIVDRPIKCEVCGKGFFYNGKLTNHMRIHTGEKTCVCYFCGKSYASNETLRVHIRTHTGEKPHACTFCTRKFNSSGNLNIHTKIHTGEKPYKCQYCEKAFHDSVSCRQHEKVHTRNYPYKCKLCGKAHSQPSNLKQHMRHAHQEVQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -