Thel124824.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- clz9
- Assembly
- GCA_963556165.1
- Location
- OY744484.1:3913328-3915511[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-10 6.5e-07 31.8 0.0 3 40 14 50 12 53 0.93
Sequence Information
- Coding Sequence
- ATGTCAACAAAAAGCCGCCAAATCCGCAACTATTCAGGTGAAGCCATCCAGGAAGCGGTTAACCAAATTAGGAATGGGATGCCAGTACGAGTTGCCAGTAGGACATTTAACATCCCAAGAACCACCTTACAGGACCGAATTCACGGTCGAGTGGCAGAGGGTATAAGTAAGATGGGACCATCAACAATATTATCCGTGGAAGAGGAAAAGAAAATAGTAAGCTGGCTCATATCGCTTGCCCAATGTGGATTTCCAAGGAACCGGGACGAACTACTTTCAgtagttcaaaaaattgtactAGAGGATGGACGACCCACAACGTTTAAAGAAGGCCGCCCGGGGAAGAAATGGTACTATAGCTTCTTAAAACGCCATTCCGAATTAGCCATAAGAACACCGGAAAATATATCAAAAGGGAGAGCCATCATAACGGAAAACTACATTAGGAAATGGTTTAGCGATTTAAAAACCTACCTTGATTCCATAGAGGCACACGATATTTTAGACGACCCTTCCAGAATTTTAAATGGCGATGAGACGTCCTTTTCAATGGTGCCCAAATCTGGTGTTATTATTGCCCCCAAAGGTTCTCACAATGTCTACCAAATTAATCCTGGCAAGGAGAAGGAAATGTTAACCGTACTTTTAGTTTTTACGGCCAGTGGCGAAACTCTACCGCCAATGGTAGTATTTCCATACGTACGACCACCTGCGGCTATTGTTAATAGCATGCCAAATAGCTGGATTTTGGGCCGGTCAGAAAGTGGATGGATGCGCAGCGAAACCTTTTATGAATATGTTGTGAATGGATTGCATGTTTGGCTGAACCAAAACAACACAAAGCGCCCAGTATTATTGCTCGTAGACGGACATAAATCCCATTTATCCATGACTCTGAGCAATTTCTGCAGTAGCAATGGGATTATATTGTACGCTCTGCCTCCAAACACGACCCATATTATGCAACCTGCGGATGTTGGAGCGTTTAAAGGGTTAAAAAGCGACTATAGAAAAACGGTTAGAAGCTGGCAAAGCCTACCTGAAAATTTGGGAAAGGcagtaacaaaaacaaatttttgtaaattgttggACAGCGTTTTAAATCAAAAAGATCGGACGGGAATAATAAAAAACGCTTTCAGAAAATGTGGTTTATTCCCTTTTGATCCAGACGCGATCGATTTCACTAAATGCGTTCAGGACACGTTAGAAAATAACATGCCTAGTTCTAACTGTAATCATCGTAGTTTTACAAAGGCAGAGTATGATAgcgctaaaaatattattaagtcAATTAAAGAGGAATTGCAACAAAGAAACATCAATTACGAGACGATCATCAAtctgatttcagaaatatcggACGAAAAGAACATAAGTGACGAAATTGAGTCGGGCACCTACATAATTGGTAACCAAGGAGAACTGGTTAAGATTAATTCAGACCTATCGGATGAAACGGTTTCAGTTACCACCAGCGACAATATTTTAGAGACAGATAGTGATGACCTAGATGCCACTTTAGTTTCAGATGTTCACTCTGACTTATTCAAACAAATACTGCCGATTACCAACAGTAATATAgatataattatcaataataataccCTAGGCGTAACTTCTGTTCCTTCAACAAGTGGGATAttgaaaaatatcacaaatatgTCCGTCGTCGATCTGAATACAACCAACGATGAAAATGTAACAGCAAAAGAGAAGATACCTTGTACGATTGTAGCTACGAAAATTACTAGAACGGCATCGGTTGAAAAACATTTAGTTTATCCGCAACCAATCTCAACAGCCACCAAAAGGGATCCCAAAAAAAAACCACCGTTGTCGGTGTCGTCCGAAGCATGGAAACTCTTTTATAAAGAGAAAGAAAGGCTCCTGTTtgaaaaacaggagaaaatcAAGGAAAATAAGTTGCAGCGCATTCAAAACCGTTTAGAGCGAGAAGCAAAAAAAGTAAATCGGAAGCGacgaaaaaacagaaaatctaaAGTTAAATGTCCAGCTTGTGAAGATGATGTCTTGACTGATGTTGAGGAGGATGCCCTTAAAAATATAGGATGTGATAAATGCGAACGCTGGTTTCATCTTCAATGTACTCCTCTATCACATTTGGCATTTAAAGAAGCAGAGCAACACGATTTTAAATGTAGCTTCTGTTGTGATgattag
- Protein Sequence
- MSTKSRQIRNYSGEAIQEAVNQIRNGMPVRVASRTFNIPRTTLQDRIHGRVAEGISKMGPSTILSVEEEKKIVSWLISLAQCGFPRNRDELLSVVQKIVLEDGRPTTFKEGRPGKKWYYSFLKRHSELAIRTPENISKGRAIITENYIRKWFSDLKTYLDSIEAHDILDDPSRILNGDETSFSMVPKSGVIIAPKGSHNVYQINPGKEKEMLTVLLVFTASGETLPPMVVFPYVRPPAAIVNSMPNSWILGRSESGWMRSETFYEYVVNGLHVWLNQNNTKRPVLLLVDGHKSHLSMTLSNFCSSNGIILYALPPNTTHIMQPADVGAFKGLKSDYRKTVRSWQSLPENLGKAVTKTNFCKLLDSVLNQKDRTGIIKNAFRKCGLFPFDPDAIDFTKCVQDTLENNMPSSNCNHRSFTKAEYDSAKNIIKSIKEELQQRNINYETIINLISEISDEKNISDEIESGTYIIGNQGELVKINSDLSDETVSVTTSDNILETDSDDLDATLVSDVHSDLFKQILPITNSNIDIIINNNTLGVTSVPSTSGILKNITNMSVVDLNTTNDENVTAKEKIPCTIVATKITRTASVEKHLVYPQPISTATKRDPKKKPPLSVSSEAWKLFYKEKERLLFEKQEKIKENKLQRIQNRLEREAKKVNRKRRKNRKSKVKCPACEDDVLTDVEEDALKNIGCDKCERWFHLQCTPLSHLAFKEAEQHDFKCSFCCDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455579;
- 90% Identity
- iTF_01455579;
- 80% Identity
- -