Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0012 1.3 11.7 0.1 4 37 46 79 43 86 0.80

2 4 7.2e-10 7.5e-07 31.6 0.0 5 37 99 132 98 139 0.86

3 4 0.21 2.2e+02 4.5 0.0 7 38 148 179 147 181 0.89

4 4 8.6e-09 9e-06 28.1 0.1 2 39 202 238 201 243 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0012	1.3	11.7	0.1	4	37	46	79	43	86	0.80
2	4	7.2e-10	7.5e-07	31.6	0.0	5	37	99	132	98	139	0.86
3	4	0.21	2.2e+02	4.5	0.0	7	38	148	179	147	181	0.89
4	4	8.6e-09	9e-06	28.1	0.1	2	39	202	238	201	243	0.91

Coding Sequence: ATGAACGCTAATGAAATTATACATCCTACAAATTGTAATGAGAcattttccgaaaattataaCACAATTATACATCAGAAATATGTTCCTCATTTACCAAATTACGATGAAGATACCAGCAGTAATACACATTTGGAGTTTGATAAAGctattgaagaaataaaaaatggtgGAAAGCTTAGCGATGTTTCTCTGAAATATAAGATACCAAGATCAACTTTATATTTTCGTGCAAGGAAATGTAGTATACAATTACGTTTAAAAGAAAACgcttttaataacaaatatagACATCTTAACGAGGCCATGAATGCAATTATTAAGAATGGCATGAGTTATAAGAAAGCTGCAAAATTATACAACATTCCAGCTACAATACTTTGGCGAAACGCTAAATCAATAATGAACGAAGAACGaacaataacaaatataaataagtaCAAGGCAATTCAAGAACTACAGAATGGAAACTTGAATCTAAGAGATctttataaaaaacataaagtaTCAATTTCAACTTTATACCGTGAAAAGAAGAAATTATGTTTGGAAGGGAAATTACCACAAGATTGCCTGTTACAAAATCGGCAACGGTCAACaacgcaagaaactattaatcAAGCCTATGATGCATATAAAAATGGAATGTTACAAACTCGGGCTGCTGCTTTATATAACATACCCAAAACTACATTTTCGCGATACGTAAAACGCATGTCCATCGAGAACACTACCAGTATTTCGAACAAGGATAAAgaagatattgtatttgatgTTGATGCaacttattcaaaaaaattatttggaagctaa
Protein Sequence: MNANEIIHPTNCNETFSENYNTIIHQKYVPHLPNYDEDTSSNTHLEFDKAIEEIKNGGKLSDVSLKYKIPRSTLYFRARKCSIQLRLKENAFNNKYRHLNEAMNAIIKNGMSYKKAAKLYNIPATILWRNAKSIMNEERTITNINKYKAIQELQNGNLNLRDLYKKHKVSISTLYREKKKLCLEGKLPQDCLLQNRQRSTTQETINQAYDAYKNGMLQTRAAALYNIPKTTFSRYVKRMSIENTTSISNKDKEDIVFDVDATYSKKLFGS

Sequence clustering based on sequence similarity using MMseqs2