Tcon029277.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744476.1:224301572-224304140[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.4e-06 0.0011 20.6 1.1 3 23 253 273 253 273 0.99 2 14 4.3e-05 0.0064 18.2 2.4 1 23 278 301 278 301 0.98 3 14 0.0024 0.36 12.7 0.6 1 23 376 399 376 399 0.95 4 14 0.57 86 5.2 0.9 3 23 404 425 403 425 0.93 5 14 0.13 20 7.2 0.9 3 23 443 463 441 463 0.94 6 14 1.2 1.8e+02 4.2 0.4 1 19 481 499 481 504 0.79 7 14 6 9e+02 2.0 0.1 1 23 545 567 545 567 0.90 8 14 0.71 1.1e+02 4.9 1.9 2 23 572 596 571 596 0.92 9 14 0.00084 0.13 14.1 1.3 1 22 602 623 602 623 0.94 10 14 0.0021 0.32 12.9 0.8 1 21 630 650 630 651 0.95 11 14 1.3e-06 0.00019 23.0 1.7 3 23 660 680 659 680 0.99 12 14 1.4e-05 0.0021 19.7 0.4 1 23 686 708 686 708 0.96 13 14 0.0099 1.5 10.8 6.9 1 23 714 736 714 736 0.98 14 14 0.017 2.6 10.0 6.6 1 23 742 765 742 765 0.97
Sequence Information
- Coding Sequence
- ATGGAACTTTCCTCtgaattggaattggatatacaaaatatgtgcCGTGTATgtttattacaaaaagaaaaattaaataatatatacacaaattgcATTGTTGAGGGATATGTAATTCCGCTgcctgaaattataaaatcatgtcTAGATTTGCATCTGAAAAAAGATGataaaaatttgccaaaaaaaatttgtgatcaATGTAAAATTCaggttataaatttttattcgttcaaagaaaaatctaaaaaggTCGAAGAAGCACTAAAAAACTTGTTGAGTACATCGAATTTAATTAGGGAAGATGAGAGAGAAATTGATACAGATGAACACAACCCAATTAATGATACAAATCATATTAAAACAGAAGCTGTAGCAAGTTGCGAGGAAGTGACTGAATATGATGAAAACGAAACCTTTGAAGAACAAGTTGAACATAAGTTAATTGAATCatcaacatttgaaaaaatagaaACGCAAGAACAATTTCAATATTCCAATATAAATCATACTGAAGATTTGATTTCTTTAGGCCATGTAGATGATGATAATAATGAAACGGTTGACTTGCCGCAAGTGATAGTAGATTGTGACGAGGTTGTGAAAGATGAAGATGATATAGACTTAGACGAAGCAGAAGAGGAGGAAGAAAATCTTATAGAAACTAATGAAGAGTCACGGGAAGTCTTAAACGATGAATCGACACATGAAACAATTAACGAACCCCAGAGTACCGATATGAACTTGTTGAATGGTTGTAATATATgtggaaaaaaatttgaaactattaataatttgaagCGCCATTTAGATACACacaatggaattttttttaaatgtcgtATTTGCCCAAAAATGTATGCTCATCAAGCATCACGAAATCGACACATGAGGATAAGACATTCGAAACAGGTAAAGGTTATCATGTCACAAAAAGATAATCCTTTCCAAAGGAATGATCCTTTAAAcccaccaataaaaattaattcgcaTGAAGATACGGTCACAAACGAAACGGTCGCTTGTGTGTCCGAAACTGGTTTAAACGATAAACATTCTGACGTATACGAAATCCAAATGCTTTCTGAGCTTGATGATGAAGTTATGTATATTGATGATTATGAATATGTGTGTACAATTTgcgagttaaatttaaaaaccaaatccaTGCTtgtaaaacattcaaaatatgaACACCCAAacgaattttgtaataaatgctTCAAATTATTTGCCAGCATAGAAGAACGAAATAAACATTTGTTGCAAGAGCATTCATATGAATCGTCAAATATTAGGTCACATAATCATGTCTGTTTAACTTTTTGTCGAATTtgtcaaaagaaattaaaatctgtCGTTGAATTGAATACCCATAAAGAGCTACATGATGCATTAAATAAATCGATGGACAATTCAGCATCGCGTATGGTAACATTTTTTACATGTTACAAATGTAATACGGTATTTCTAAGTGAGCAAGGTTTACAAGGGCACAATCTAGCTAATCATAGCGAATCTTCTAAAAAATCGAATTTGGATGACGACAGTATTGATTGCACTGACTATCAATTTTTGGAAGATGACGAAGCATCGGTGGCCcatgaaaacaatttaaatgatgaaaagCCGTTTAGTTGTGGAGTATGTAACGTTCAACTGCTTAACGAGAATGAAATGCGTAACCACATCATTATCCATTCTACAAAGTTATCCTGCCCATTTGATGAATGTGGCTGCgaatataatagtttttcaaGATTAAGTTTACATATAATTCATCGGCATTTGAATCGTGAGGCctttaaatgtatccattgtgGCGAATCGTATAAGAGCTACGATGATTTACAGAATCACCTAAAAAAAACGTGTCCTGAGCGAAAATATAACTGTACACATTGTGaaAAAAGTTTCTTTTCCATTAAAGCGTTGGGAATTCATATGAAAAGTTCGATTGAGAAAAAAGCAATTCTCTGTCAGATATGTGGTAAATCCTTTTCACATCAAGGCGAACTAAAGATTCATTCTAGAACACATACGGGAGAGCGACCTTATCGCTGTAATATATGTGGCAAAGCATATAAAACCGCTAGTATGAGAACTTCACATATGGATGCACACATTCAAGGAAAAACATTCCACtgtacaatttgcaataaaaagttGCAAACACGGTCAAGCTTTCGCAATCATTTTCGACGGCATACGGAGGATAAGAAACATCAGTGCACAATTtgtttgaagaaattttttaccaagTACCATGTCAAACTTCATACGATGAAAGTCCATGATAATCCGAAGcgaatccaaaataaaaatgttggaatCACAACAGCACAGAATTTACCTCGATACCAAACAGATCCTTAg
- Protein Sequence
- MELSSELELDIQNMCRVCLLQKEKLNNIYTNCIVEGYVIPLPEIIKSCLDLHLKKDDKNLPKKICDQCKIQVINFYSFKEKSKKVEEALKNLLSTSNLIREDEREIDTDEHNPINDTNHIKTEAVASCEEVTEYDENETFEEQVEHKLIESSTFEKIETQEQFQYSNINHTEDLISLGHVDDDNNETVDLPQVIVDCDEVVKDEDDIDLDEAEEEEENLIETNEESREVLNDESTHETINEPQSTDMNLLNGCNICGKKFETINNLKRHLDTHNGIFFKCRICPKMYAHQASRNRHMRIRHSKQVKVIMSQKDNPFQRNDPLNPPIKINSHEDTVTNETVACVSETGLNDKHSDVYEIQMLSELDDEVMYIDDYEYVCTICELNLKTKSMLVKHSKYEHPNEFCNKCFKLFASIEERNKHLLQEHSYESSNIRSHNHVCLTFCRICQKKLKSVVELNTHKELHDALNKSMDNSASRMVTFFTCYKCNTVFLSEQGLQGHNLANHSESSKKSNLDDDSIDCTDYQFLEDDEASVAHENNLNDEKPFSCGVCNVQLLNENEMRNHIIIHSTKLSCPFDECGCEYNSFSRLSLHIIHRHLNREAFKCIHCGESYKSYDDLQNHLKKTCPERKYNCTHCEKSFFSIKALGIHMKSSIEKKAILCQICGKSFSHQGELKIHSRTHTGERPYRCNICGKAYKTASMRTSHMDAHIQGKTFHCTICNKKLQTRSSFRNHFRRHTEDKKHQCTICLKKFFTKYHVKLHTMKVHDNPKRIQNKNVGITTAQNLPRYQTDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -