Tcon009299.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744475.1:115972448-115975221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.026 3.8 9.4 2.0 1 23 64 86 64 86 0.98 2 17 1.2 1.8e+02 4.2 3.3 1 23 92 115 92 115 0.96 3 17 0.039 5.8 8.9 0.1 1 21 137 157 137 158 0.93 4 17 0.022 3.3 9.7 1.7 1 23 166 188 166 188 0.98 5 17 0.00055 0.082 14.7 1.5 3 23 196 216 194 216 0.96 6 17 0.00014 0.021 16.5 1.1 1 23 222 244 222 244 0.96 7 17 0.43 64 5.6 0.3 1 21 250 270 250 271 0.94 8 17 1.9 2.9e+02 3.6 0.4 1 23 551 574 551 574 0.92 9 17 0.00052 0.078 14.8 0.2 1 23 603 626 603 626 0.96 10 17 1.3 2e+02 4.1 0.7 1 23 632 654 632 654 0.96 11 17 0.082 12 7.9 2.3 1 23 662 685 662 685 0.94 12 17 0.071 11 8.1 0.1 1 23 688 711 688 711 0.94 13 17 0.0043 0.65 11.9 0.1 2 21 722 741 721 742 0.95 14 17 6.6e-05 0.0098 17.6 1.5 1 23 750 772 750 772 0.97 15 17 7.2e-06 0.0011 20.6 2.8 1 23 778 800 778 800 0.98 16 17 0.0013 0.19 13.6 1.2 1 23 806 828 806 828 0.98 17 17 0.14 22 7.1 1.6 1 22 834 855 834 855 0.95
Sequence Information
- Coding Sequence
- ATGGAGCACAGTGAAAAGGATTCAaatgatttgaatgaaaaaccaaattatattgTTGAAGGTAATAAATATGTTTGCCTGTTTTGTGGCAGTAAAAACCTTAACAAAGCCCGTTGTGAAGCCCATGTCCGAGATTGTGATGAAAAATGTGGATCCGTGACATTCATCGAAGTTGACGGATATCCAAAATTTCAGTGTACTGTGTGCAGCcgtctatttaaatatttcgttgcCATGAAAAAACATGaactaaaacataatttacCTGGTGGATTTATATGTAGCACTTGTGGTCAAAGGCATATAAGTGAGATAGCTCTTTCTAAACATCAcaaaactaaacacaaaaatgagATAGATGCCACTAAACCAGAAATCGAAGACGAAGCTGAAAATCAAACTAAACCGTTTCGTTGCAATGACTGTGGCGcaatttttcttaaacaaaatGCTTATCAAGCGCACTTGAACTCTAAATGTGGTACtgacaaaaagtttaaatgtaaaatttgctCGGCCAAATTTCTTACCAAGAATACGCTATACGCTCATAAACAGATTCACGTGGGTGTAAAACGGCATTTGTGCGACTATTGTGGGACTAGCTTTTTAAGCAAAGGACAACTAAAAGTACATGAACGATCTCATACAGGTGAAAAGCCCTTCAAATGTGAAACATGTAACAAAGGATTTTCGTACCGCGAAAGTTTGGTAACTCATTCATCGGTGCACACTGGCATTCGACCGTATGCGTGCCAAGCATGCGATTTACGATTCTCGTGCATTGGAAATTTAATCAAGCATCGAAGAGCTCGCCCTGAAACATGTGGCCTGGCTAAATATCAAAACCATAAAGTTGCGCCCAGAGCCAGTAcaaaacttaaacaaatttCAGATGCCACTTACACTGTTGATCAGTCGCAAGAAATTGAACAAAAGCTCGATATAAAACGAATGAGTCCTGTGAATGAGATCATTGAAGTCGAGCGTATAACTGCGTCACCAGTTCTTGAACCATACTCGACAATATTTGAAAGTCCgccaacaataaaaacattttcggAAACAACGATCACCGATCAAAAACCAATCCTATATCGGATCACTGAAATAAAGCCAATCGATTCACAAATAATTGACTTGAATAGCATCGATGAGATACGATCGTTTAAGGATGAGAATATTATTGTCACCATGAAAGCTGATCTAGACGATCAAGATGACGAAGGTGAGATGGTTGATGAGCAGGAAGAGAATGCCGAAACGAACGAAGAATATCTTCAGTATGTACAATCGGCGGACGAGAATAGTGGCGATGGTGCTGGTGGAGAATATGTCACTTCAGACTGGTACGAGAAGAGCGAGAATAttgaatatgttaaaaatgacAGTGAGTTAGTAGAAACCAACTATGTCCTAGAAATTGAGTTACAAAACACCGATCAACCGGAACCTACATCGGATTCGATATACACCATTATAAAAGAAACACCTGACTGTGAAACGTTTATCCTGCAGACGGCATCCGAAAAGGACAGCCAAAATGAAATGCtggtaaaatatgaaaattcggATGAAGAAACTGAAGAAAGTGATCAGCAAGAGGATACAGATATAACACCAATAGAACCGAATACGGCAGCGGCACTGTACAAATGTAGTTTTTGTCCACAACTTTACCTACAGGAGAACCGATTAAGGAACCATCTGATCATAGATCATTTCAAAAATGATAATGAGCCTAGGCGTCAAGAAGAGCTAGCAAATGATCGAGCAAATGGCATAACCGATGACACATCTCAAGTACATCGATGTCCTTTGTGTCCAAAAATGTACATACAGCCGATTAGACTAAGGAACCATCTTATAATCGATCATATGGCAAACGGCGAATTCGCTTGTAGAGTTTGTTATAAATGGTTCGACTCAGAGGGCATGCGAACAAAACATGAAAGAAGCCATGGCCCCGATGGTTCACTCATACATAAATGTCCGTCGTGTGAATTATATTTTGGCTCGTTGGATGAACTCGAAGCGCATCATCACCAAATTCACTTCTGTTTTCGGTGTCCAAAGTGTGCGATTTCCGTTGATACAATGGAACTTCTAAAACTACATATAACGGAAAAACATAAACTAGGAAGAAACGATCCCAACAAAAATAAGTGTGAGCTATGCGGGCGATTGTTTTCCACTAAGATTGCACTATCGGATCATGTGAGAGCAAATTGTGGCCGATCACCGCTTTACAAGTGCGAATCGTGCGGTAAAAGTTATCATAGcgctggaaatttaaaaattcataaaactatCCATACTGGAGAGCTTCCATTCCAgtgtaaatattgtaataaaatgtttcGGACCAAGGGACAAGTTAAAGTGCACGAACGACAGCATAGCGGCGAAAAACCTTTCAAGTGTGATTCGTGCATCAAAACATTCGCGTATCGTGAAAGTCTTATAACTCACCAATCGACCCATACTGGACGCAAGCGATTTATGTGCGTTTCGTGCGGATTACGATTTTCTTGCATCTCGAATTTACAATCTCACCGAAAAACGCGTAAACAAACATGTGGCCAACTGGTAAGTAGTAACATAAATCCTCTCGAGCTTTCGAACGACGAGGTAAAACTAGATGAGttggttgaataa
- Protein Sequence
- MEHSEKDSNDLNEKPNYIVEGNKYVCLFCGSKNLNKARCEAHVRDCDEKCGSVTFIEVDGYPKFQCTVCSRLFKYFVAMKKHELKHNLPGGFICSTCGQRHISEIALSKHHKTKHKNEIDATKPEIEDEAENQTKPFRCNDCGAIFLKQNAYQAHLNSKCGTDKKFKCKICSAKFLTKNTLYAHKQIHVGVKRHLCDYCGTSFLSKGQLKVHERSHTGEKPFKCETCNKGFSYRESLVTHSSVHTGIRPYACQACDLRFSCIGNLIKHRRARPETCGLAKYQNHKVAPRASTKLKQISDATYTVDQSQEIEQKLDIKRMSPVNEIIEVERITASPVLEPYSTIFESPPTIKTFSETTITDQKPILYRITEIKPIDSQIIDLNSIDEIRSFKDENIIVTMKADLDDQDDEGEMVDEQEENAETNEEYLQYVQSADENSGDGAGGEYVTSDWYEKSENIEYVKNDSELVETNYVLEIELQNTDQPEPTSDSIYTIIKETPDCETFILQTASEKDSQNEMLVKYENSDEETEESDQQEDTDITPIEPNTAAALYKCSFCPQLYLQENRLRNHLIIDHFKNDNEPRRQEELANDRANGITDDTSQVHRCPLCPKMYIQPIRLRNHLIIDHMANGEFACRVCYKWFDSEGMRTKHERSHGPDGSLIHKCPSCELYFGSLDELEAHHHQIHFCFRCPKCAISVDTMELLKLHITEKHKLGRNDPNKNKCELCGRLFSTKIALSDHVRANCGRSPLYKCESCGKSYHSAGNLKIHKTIHTGELPFQCKYCNKMFRTKGQVKVHERQHSGEKPFKCDSCIKTFAYRESLITHQSTHTGRKRFMCVSCGLRFSCISNLQSHRKTRKQTCGQLVSSNINPLELSNDEVKLDELVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -