Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744476.1:224306138-224308322[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00079 0.12 14.2 0.1 2 23 240 261 239 261 0.96

2 9 0.05 7.4 8.5 0.2 1 21 332 352 332 353 0.91

3 9 2.1 3.2e+02 3.4 0.3 1 23 465 490 465 490 0.94

4 9 0.00018 0.027 16.2 1.8 2 22 497 517 497 517 0.94

5 9 0.00013 0.019 16.7 0.8 1 23 524 546 524 546 0.99

6 9 2e-07 3e-05 25.5 0.7 1 23 552 574 552 574 0.99

7 9 3.9e-06 0.00058 21.5 0.5 1 23 580 602 580 602 0.98

8 9 0.0024 0.36 12.7 0.1 1 23 608 630 608 630 0.97

9 9 6.1e-06 0.00091 20.9 2.3 1 23 636 658 636 658 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00079	0.12	14.2	0.1	2	23	240	261	239	261	0.96
2	9	0.05	7.4	8.5	0.2	1	21	332	352	332	353	0.91
3	9	2.1	3.2e+02	3.4	0.3	1	23	465	490	465	490	0.94
4	9	0.00018	0.027	16.2	1.8	2	22	497	517	497	517	0.94
5	9	0.00013	0.019	16.7	0.8	1	23	524	546	524	546	0.99
6	9	2e-07	3e-05	25.5	0.7	1	23	552	574	552	574	0.99
7	9	3.9e-06	0.00058	21.5	0.5	1	23	580	602	580	602	0.98
8	9	0.0024	0.36	12.7	0.1	1	23	608	630	608	630	0.97
9	9	6.1e-06	0.00091	20.9	2.3	1	23	636	658	636	658	0.96

Sequence Information

Coding Sequence: ATGTTAGAAGAAaatgaatatgaattagaaatcaGTTCCGAGGAAATATGTCGTTCGTGtcttaatcaagaaaaaaatttaaaaagtttattttgtagtGAAATTTTGGATGGCCAAATtgtgtcatttccaaaaatttttcaaGATGTTACCGAAATTAAggtTTCAAAAAATGATAATCTGCCGTCACGAATctgtgaaatttgtaaattaaaagtcaatgaTTTCTACGTATTCAAAGAAAAATGTCGTAGATCCCATGAACTGGCACTgtccatattttcaaaaactcataCGGAAACATGGACACTTCAACTGGACAATACAtcaaaaaatgatgatgatgatgaatttgGAACAGTTTCGGAACCGATTCATGACCCTGATTTGATAATTGGTGTAGAAATTCCAACACAATTATTGGAAGAGAATTCCAAagtcgaaataaaaaatgaaatactacCGTTAAATGATGGTGATGTCGAGGCTGATGATTGCCTTGTTGATGTCTCCAATATTAAATCAGAGTCTGACATAATTGAACAAAACACTATAGAATTTACCGAGGATGAACAAGCAGAAGAGGAAGCAATCGAAAGTGGCGATACCGAGGGTGATTACGACGAATTAAAAAACACAACTGAAGAATATTTAGACGAGCAGGAATATGGTGTAATTGAATTAATCGATGAAGATACATCCGAAATGGGTGAATTATCATGCGAAATATGTAAAATCGAATTCATTAATAAAACCGAATTCATCGAACATATAAAAGGTCACGATTTAACCGATGGTATTAATATAATAGAATCCAATATTTCCGATGAAGAAGATAAAAGATGGAGGCAgcgtaaatttggaaaatacgGGGAATACTgtaaattttgcaaaagtttTGTAAAGTGCAAACCCAACGAAcccgattattttaaaaatcacgtCGATATGCATAGACaaacacttaaaattatttttgagacgATCGATTTGTATAAATGTGGCACTTGTAATTTAGtgtttattaatcaaaatatttatagggAGCATATTAATTCACAAGAATACTGTTGTAAGAACACAAACGCCATCGATCTCGAAACTTCTGAGTCTAAATGTAGAGAAttggaattttttgaaaacgattttgaatctcaaaaacctataaaaattattaactgttCGAAAATCAACGAAAATGGTTTATTAGAATGTAAATCGTGTACTGGATTTCAAACAACAGAGATTGACATGCTGGTAGAGCATACTGAGAAAGAGCACAACAACAATTCTGTTGATTACAATAATcgtgtaaatatttgtaatttttgtaacaaaTGGTCAGCATCATTAGTAGAAATATTGATGCATGTCTATTTCCATGCTAGAACATATAATTGCCCATTCCTTAACTGTGCTATGCTTTATAATTCATTCGCTAAACTAAATACACATTTAGAGCGTgcacatttatttttgaatacgCCAACGTGTAATCATTgtgacaaacaatttaaattttacgacgATCTAACAGTTCACCTGAAACGATTTTGTGAAAAACGAATTTACAAATGTGATGACTgtagcaaaacatttttgtccAATTCTAGTCTAGGAGTTCATAAACGTATtcacaatcaaaatataacATATGTCTGCcaattttgtggaaaaaaatTCACACAGAGCGGTGACTTGAAAATTCATGTTCGAATGCATACGGGCGAAAAACCATATCAGTGTCCGTTGTGTCCCAAACAATTTCGAACTTCGGGCAATAGACAAGATCATATGGAATCGCATAATGGATCTAAAAACTATtcatgtgAAATATGTATGAAATCGTTTAAAGGCGAACGAGTATTAAAGGCTCATATGGTTATTCATTCAGGCGAGAAGAAATTTCTTTGCCCAATTTGTGGCAAACAATTTTATAGGAAACAGCATGTTAAAAGTCATCTACGCGTTCACGAAAGGCGGCCAAATAAACACAAAGTGATGGATTGGTTAGATGATGATGGGGGTTCTGAATCGAACGCTGAAACAAAACttgacaaataa
Protein Sequence: MLEENEYELEISSEEICRSCLNQEKNLKSLFCSEILDGQIVSFPKIFQDVTEIKVSKNDNLPSRICEICKLKVNDFYVFKEKCRRSHELALSIFSKTHTETWTLQLDNTSKNDDDDEFGTVSEPIHDPDLIIGVEIPTQLLEENSKVEIKNEILPLNDGDVEADDCLVDVSNIKSESDIIEQNTIEFTEDEQAEEEAIESGDTEGDYDELKNTTEEYLDEQEYGVIELIDEDTSEMGELSCEICKIEFINKTEFIEHIKGHDLTDGINIIESNISDEEDKRWRQRKFGKYGEYCKFCKSFVKCKPNEPDYFKNHVDMHRQTLKIIFETIDLYKCGTCNLVFINQNIYREHINSQEYCCKNTNAIDLETSESKCRELEFFENDFESQKPIKIINCSKINENGLLECKSCTGFQTTEIDMLVEHTEKEHNNNSVDYNNRVNICNFCNKWSASLVEILMHVYFHARTYNCPFLNCAMLYNSFAKLNTHLERAHLFLNTPTCNHCDKQFKFYDDLTVHLKRFCEKRIYKCDDCSKTFLSNSSLGVHKRIHNQNITYVCQFCGKKFTQSGDLKIHVRMHTGEKPYQCPLCPKQFRTSGNRQDHMESHNGSKNYSCEICMKSFKGERVLKAHMVIHSGEKKFLCPICGKQFYRKQHVKSHLRVHERRPNKHKVMDWLDDDGGSESNAETKLDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01458929;
90% Identity: -
80% Identity: -