Tcon012422.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744475.1:166991757-166993892[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0062 0.93 11.4 0.2 3 23 41 64 39 64 0.90 2 10 0.026 3.9 9.4 0.4 1 23 83 107 83 107 0.96 3 10 0.00091 0.14 14.0 0.1 3 23 115 138 113 138 0.95 4 10 0.11 17 7.4 0.4 2 23 145 169 144 169 0.93 5 10 3.7e-05 0.0055 18.4 3.3 1 23 175 197 175 197 0.96 6 10 7.6e-06 0.0011 20.6 1.2 1 23 203 225 203 225 0.97 7 10 3.1e-05 0.0046 18.6 2.3 2 23 229 251 228 251 0.96 8 10 5.2e-07 7.7e-05 24.2 2.0 2 23 256 277 256 277 0.98 9 10 9.1e-05 0.014 17.2 1.2 1 23 286 311 286 311 0.96 10 10 0.016 2.4 10.1 4.6 1 23 315 339 315 339 0.98
Sequence Information
- Coding Sequence
- atggataaaacaaaaaccGAAGAAGAAGAAGATGCAGAAGTTACATCGTATTTCACCACAAGTGAtaacttattttcaaaaactgaaGAAGAATGTGGGACTGATGTGAAAACGGTCGAATGTGTTGTAGAAGGATGTAGTAAAAAGTATGCCACACGTGCCACTATGATCCGGCATCTTAAAAAAACGCATCCCAAAAGTGAAAAGATAGCGCAAGTAACCAGTAAACCTCCAcccgaaaaaaaatataaatgtgacTTTGATGGTTGCGATAAGGAATTTTTGCGGAAAATTGGCTTAGATAGTCATATGTTTGAGCATACTGGATTGAAAACCCTTGATTGTCCGATTGATGGCTGTGATAAACTGTATGTAACGATGCAATCTCTTCAAAGACATTTGAAAACTATTCATCTCCAAACCGAATTAGTAACATGTAAAGCACCAAACTGTAAGCAACAGTTTGAAACGACGGTTGAAATGCAAGAACATTACAATAAATCGCATCTTAACGAAAAGAATCATATTTGCACCGAGTGCAGTGAAGGCTTTCGTCGCAAAATGGATTTGAGAAAACATATGTTTAAGCATACTAACGAATATCCATTTAAGTGTACGGAATGTGATAAAGGTTTTACGGAAACACAAAAATTGACTAAGCACATGGAATGGCATACGGGAAAGAAATGCCAATTTTGTCAGCAAACGTTTAAAAATTGGACAGAATTGGTGCGGCATCAAAAAAATGAGCATTCAAGTGATCCGAAATGTGACGAATGCGGCAAAATGTTTAAGACTCGAGCATTTTTAAGACGTCATTTGAAAATGCATTTGCGTAGTGGGGAGCGCAAACTTTTCGAGTGTTCGTATGAAAATTGTACACGGTCTTACACGCAATACAATAATTTGCAAACCCACATTAAATCAGCGCATCAAGGTATTTTTAAGTGTACATTTAACGAATGTACTAAAAGTTTGAGTAGCAAAAGGAGATTATTACATCACTTAAAGCTGCATGAAAATCCTAAGCCCGTATCGGTGGTGCCAAAGAAGAAACCAACCTTTACTAAACCGAAAAAAGTGTTTAACCGATTTTCAATGGCATCGAAATTAGTGAATATTGAAAATCCATTTGaattggaaaaacaaataatattgggaaatggtgaaaatataataattaccgATGATGACGATAATATGTCATCACATTCGGAAGTAGTATTGGACGCATCAGATAGTGAAATTCGAACAACGCCAAAGGATTCAACAGCAATGGAATATGTTAATTGTATTAGAGAAGTTATCCGAAAAGATTATAATTCCGATAGTGGTTCGTCTACCACtttattagtattttaa
- Protein Sequence
- MDKTKTEEEEDAEVTSYFTTSDNLFSKTEEECGTDVKTVECVVEGCSKKYATRATMIRHLKKTHPKSEKIAQVTSKPPPEKKYKCDFDGCDKEFLRKIGLDSHMFEHTGLKTLDCPIDGCDKLYVTMQSLQRHLKTIHLQTELVTCKAPNCKQQFETTVEMQEHYNKSHLNEKNHICTECSEGFRRKMDLRKHMFKHTNEYPFKCTECDKGFTETQKLTKHMEWHTGKKCQFCQQTFKNWTELVRHQKNEHSSDPKCDECGKMFKTRAFLRRHLKMHLRSGERKLFECSYENCTRSYTQYNNLQTHIKSAHQGIFKCTFNECTKSLSSKRRLLHHLKLHENPKPVSVVPKKKPTFTKPKKVFNRFSMASKLVNIENPFELEKQIILGNGENIIITDDDDNMSSHSEVVLDASDSEIRTTPKDSTAMEYVNCIREVIRKDYNSDSGSSTTLLVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -