Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744477.1:127640891-127643601[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.024 3.5 9.6 0.7 3 23 185 206 183 206 0.96

2 10 0.48 72 5.4 0.2 6 23 215 232 215 232 0.98

3 10 1.2e-06 0.00018 23.1 0.8 1 23 238 260 238 260 0.98

4 10 5.3e-06 0.0008 21.0 1.7 1 23 268 290 268 290 0.98

5 10 0.0009 0.13 14.0 3.5 2 23 297 319 296 319 0.95

6 10 0.0024 0.36 12.7 1.1 1 23 325 348 325 348 0.96

7 10 0.023 3.4 9.6 0.3 2 23 357 378 356 378 0.95

8 10 0.16 25 6.9 0.0 1 16 385 400 385 402 0.87

9 10 0.91 1.4e+02 4.6 1.3 3 22 442 461 440 461 0.92

10 10 0.04 6 8.8 1.0 6 23 569 586 569 586 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.024	3.5	9.6	0.7	3	23	185	206	183	206	0.96
2	10	0.48	72	5.4	0.2	6	23	215	232	215	232	0.98
3	10	1.2e-06	0.00018	23.1	0.8	1	23	238	260	238	260	0.98
4	10	5.3e-06	0.0008	21.0	1.7	1	23	268	290	268	290	0.98
5	10	0.0009	0.13	14.0	3.5	2	23	297	319	296	319	0.95
6	10	0.0024	0.36	12.7	1.1	1	23	325	348	325	348	0.96
7	10	0.023	3.4	9.6	0.3	2	23	357	378	356	378	0.95
8	10	0.16	25	6.9	0.0	1	16	385	400	385	402	0.87
9	10	0.91	1.4e+02	4.6	1.3	3	22	442	461	440	461	0.92
10	10	0.04	6	8.8	1.0	6	23	569	586	569	586	0.99

Sequence Information

Coding Sequence: ATGAATTCGGATACTTTGTTATGTTGTTTATGTTTGAAACCTACTGATTTTCTTTTGAATATATATGAAGAGCAGAGTCAAAATAAATGTCTTGCCTTCATTATATCTCAACACTTCTGGTTCAATataaaaaatgaaaaaatcctTCATAAAAACGTTTGTGTTAAATGCTGGTCAAACGTCGATAATTTTCACCAATTCTACACACACGTCTACGCGGTTCACAATGAGTTCTATTCTAAAGTACACGAagaaatcaaaccaaaacatGATGAATCAATCTtagtaaatgataaattaatagtACCAGACATTAAATCAGAAAATGAAAGTTCTGAAGACAAGACACTAAACAATAGTGAACCGCTCACAGTAGATATCGAAGTAACACATGATGCTGCTAGTGATAATAGTGAATCAGATTCAGGCATGGTAAAACCAAAAAGTAATGCATTACgcataaaaaaacgaaaactttgTGATATTGATCCAGTCGAACAATTAAAAACTGAGGAGGAAAATAATCAAATCCGCGAACGTTTTATAATGAACTGTGAgcaatgtaattttaatttttatacgttTACCGATGCCCAAATTCACTATCGCACCGCACATAAAATGCATGGTTATATACGATGCTGCGATACCAAATTTAAGTCTCGCCCAACTGTAGTGGAACATTTACAACGCCATCTAAATCCCGACGAATTTAAATGTGAccaatgcaataaaacatttGTTAATAAACGTGGGCTAGCTATTCACATGGAAAGACATTTATCGACCGAGGATAAACCATTCAAGTGTACTAAATGTCCTAAAAGTTATATACGTCGTTTTCTTTTAGAGAGACACCTTGAATCACACATGGAACTGCCCAAATGTATTTGCAATGATTGTGGCAAGGAGTGCAGTAACAAAATAACTTTAAGCATTCACAAGAGAAATGTACACGATCgtgattttttctatatttgtgACGCCTGCGGCAAAGAATTTCGTAATAAACTTGACTTTGATCTGCATCATCGAAATGTACACGAAACAATTCCTCAACCAAAAGTTCAGTGCAAAGATTGCGATGCATGGctgaaaacaaaacaatcgcTTCGACAACATATGGTTCTTCACCGTGATATAAAAGTAATGCATCCATGTGCGGAATGTGAAAAATCGTTTCCGTATCGCTGGGCTCTGCTTACACCAAATAAATTGATCGACATTTTTGACAACAAACACACCGATTTACCAAtaacattaattattaaaaaatattttggatttgaGgTACAAAAAGATGATTTAACAAGTAAACATTTGTGTCAGGAATGCtggaataatataaaaacattttacaatttccaAAAGCATGTCAATACTATTCAAAGTGAATTGattattaatgataataaaGTGAATGAAACACTTGTGGTAGATGACATCGGTGATAAAGCGGGATTAAATGGCTTAAAGAGACCAGCGATAGAAGATGATAATTCCACGAAAGAAGTTGTTGTTTTGTCgaaaaagaaattaaagcaACAACTTCAAAGCGATCCAGCTGtcatagaaaaacaaaataaaattatacgagATTATATTAAAATGGAATGTGAATTATGTTCCGTCGTTCTCGATTCATTTCAAAGCATTCAATTACACTTTCGTGGTGAGCATAACACAAGAGGATATTTAAGATGTTGTAaccgaaaatttacaaaacgttTTATGTTGGTCGAACATATTCAGCGACATATAAACCCGGAAGCGTTTCTGAATCGATAA
Protein Sequence: MNSDTLLCCLCLKPTDFLLNIYEEQSQNKCLAFIISQHFWFNIKNEKILHKNVCVKCWSNVDNFHQFYTHVYAVHNEFYSKVHEEIKPKHDESILVNDKLIVPDIKSENESSEDKTLNNSEPLTVDIEVTHDAASDNSESDSGMVKPKSNALRIKKRKLCDIDPVEQLKTEEENNQIRERFIMNCEQCNFNFYTFTDAQIHYRTAHKMHGYIRCCDTKFKSRPTVVEHLQRHLNPDEFKCDQCNKTFVNKRGLAIHMERHLSTEDKPFKCTKCPKSYIRRFLLERHLESHMELPKCICNDCGKECSNKITLSIHKRNVHDRDFFYICDACGKEFRNKLDFDLHHRNVHETIPQPKVQCKDCDAWLKTKQSLRQHMVLHRDIKVMHPCAECEKSFPYRWALLTPNKLIDIFDNKHTDLPITLIIKKYFGFEVQKDDLTSKHLCQECWNNIKTFYNFQKHVNTIQSELIINDNKVNETLVVDDIGDKAGLNGLKRPAIEDDNSTKEVVVLSKKKLKQQLQSDPAVIEKQNKIIRDYIKMECELCSVVLDSFQSIQLHFRGEHNTRGYLRCCNRKFTKRFMLVEHIQRHINPEAFLNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -