Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744477.1:29179832-29182042[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0017 0.26 13.1 3.9 1 23 179 201 179 201 0.97

2 11 1.6e-05 0.0023 19.6 1.5 1 23 207 229 207 229 0.98

3 11 0.0013 0.19 13.6 3.8 1 23 235 258 235 258 0.96

4 11 0.0097 1.4 10.8 3.5 1 21 264 284 264 286 0.95

5 11 0.00016 0.023 16.4 1.9 1 23 292 314 292 314 0.99

6 11 3.1e-05 0.0047 18.6 1.2 1 23 320 342 320 342 0.98

7 11 0.0046 0.69 11.8 3.1 1 23 350 373 350 373 0.96

8 11 0.007 1 11.2 1.6 2 23 380 401 379 401 0.97

9 11 0.00059 0.088 14.6 0.2 1 23 407 429 407 429 0.98

10 11 4.8e-06 0.00072 21.2 1.9 1 23 435 458 435 458 0.96

11 11 5.2e-07 7.8e-05 24.2 1.1 3 23 474 494 473 494 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0017	0.26	13.1	3.9	1	23	179	201	179	201	0.97
2	11	1.6e-05	0.0023	19.6	1.5	1	23	207	229	207	229	0.98
3	11	0.0013	0.19	13.6	3.8	1	23	235	258	235	258	0.96
4	11	0.0097	1.4	10.8	3.5	1	21	264	284	264	286	0.95
5	11	0.00016	0.023	16.4	1.9	1	23	292	314	292	314	0.99
6	11	3.1e-05	0.0047	18.6	1.2	1	23	320	342	320	342	0.98
7	11	0.0046	0.69	11.8	3.1	1	23	350	373	350	373	0.96
8	11	0.007	1	11.2	1.6	2	23	380	401	379	401	0.97
9	11	0.00059	0.088	14.6	0.2	1	23	407	429	407	429	0.98
10	11	4.8e-06	0.00072	21.2	1.9	1	23	435	458	435	458	0.96
11	11	5.2e-07	7.8e-05	24.2	1.1	3	23	474	494	473	494	0.99

Sequence Information

Coding Sequence: ATGTCAGCAAAAATAGCTGATgttaaaataaagttggaaGGGAACGAATTAACGTCTTATCTAGAAACATTCAATAAAGAGATCGACGATGGGGAAACTATAACTGTGATTCAAGAAGCCGCATCCGAAAATGATGAAGATGAAGAGGgtggaacatattttattgatcaaaCTGGAAATTATTATTACCAAGCGACAAAAGATTCAGATCCTGTATTAACCGATCCGCCAAATGAGGAGGATGCACAATATATTGAGGAATCTGATCCTCTTGATCACGCAacgaattCGAAAACTGGTGATTTCCAAAATGTCACAATCGTTCAATCGGCCACAAATTCCGAAGAAGTTAGTTACGTACTTATCATGGACGATAATCAAAAAGGTGAGGTCGACAATCCAGACATGAACGTCTACGAATTTGATGATGAGACGCAAAGTGGTAAGCCGCCAGCGAATGACTCAAGTCCCGAggatgataaaacaaaaatcgtaaaatatgtaccaaaaaaaacCCAAGTGATCACGGCACAGCACATGtgcaattattgtaattatacaAGTCCTAAACGTTATTTGTTGTCGCGAcatttaaaatcccattccgaAGAGCGACCGCACAAATGTTCGGTCTGTGAACGCGGATTCAAGACGTTAGCATCGTTGCAAAATCATGTGAATACGCATACAGGTACTAAACCGCATCACTGTAAATTTTGTGAAAGTGCATTTACAACATCGGGTGAATTGGTGCGACACATTCGATATCGGCATACGCACGAAAAACCACATAAATGTACCGAATGTGATTATGCCAGTGTTGAATTAAGTAAATTGAAACGACATATAAGGTGTCATACTGGCGAACGGCCTTACCAATGTCCACATTGTACGTACGCATCACCCGATACGTTCAAACTTAAACGACATTTACGAATTCATACGGGTGAAAAACCGTACGAATGTGACGTGTGTCACGCCCGTTTTACCCAATCGAATTCCTTAAAAGCCCACAAATTAATTCATAGTGTCGGCGATAAACCGGTGTTTCACTGTGAATTGTGCCCTACAACTTGCGGTCGCAAAACTGATTTGCGCATTCATGTACAAAAATTGCATACGTCCGACAAACCGTTAAAATGTCGTCGATGTAGTAATTCATTCCCCGATCGATACAGCTATAAAATTCATGCGAAAACACACGAAGGTGAAAAATGCTATAAATGTGATTTATGTCCGTATGCTTCGATATCGGCACGTCACCTAGAATCGCATTTATTGATTCACACTGATCAAAAACCTTTCCAATGTGATAGTTGCGATCAATCATTCCGCCAAAAACAATTGTTGAAGCGACATATCAATTTGTATCACAATCCAAATTATGTTGCGCCCGTACCAAAAGAGAAGACACACGGTTGTCCAAATTGTAATCGGTCGTTTAGGCATAAGGGGAATTTAATACGGCATATGGCCGTGCACGATCCAAATTCGAATGTAAAAGAGGAAGCGATTGCATTGAAATTGGGACGGCAACGTCGAATTCGGATGATGAAAGGATTTAAGATGGAAGATAGTTTTGACGAGGaagattttgaagaagaagaggaggaggaggaagaagaagaagaggatGAGCCGGAGAATGAGAATAGTGCACTCAATGATACAAATGTTGTATCGGTTGATGGGGACGACGGTCAACAGTATGTGGTGCTCGAAGTTATCCAAATACAAGATGGCGAAAATGGTGAGGAAGGCGATGAAATCGACGATGAAACAATGGAAGTGGATGAAGATTTTTTAATGGGCGACGGTATCGACGAGGAAGTTTTGGATGATGCTCCCCGCCGTACAAATATTAAAAGGGAAACCGTTAAACTTACTGACAATGACTTTGAATATGAGcatgaTGAAGTGGAGCACCACGATGTTATTGATATCGACGAGGACGAAGATGAACGGGAACATAAATCTACAATACAGTTACTCGATAttcatcaataa
Protein Sequence: MSAKIADVKIKLEGNELTSYLETFNKEIDDGETITVIQEAASENDEDEEGGTYFIDQTGNYYYQATKDSDPVLTDPPNEEDAQYIEESDPLDHATNSKTGDFQNVTIVQSATNSEEVSYVLIMDDNQKGEVDNPDMNVYEFDDETQSGKPPANDSSPEDDKTKIVKYVPKKTQVITAQHMCNYCNYTSPKRYLLSRHLKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKFCESAFTTSGELVRHIRYRHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDVCHARFTQSNSLKAHKLIHSVGDKPVFHCELCPTTCGRKTDLRIHVQKLHTSDKPLKCRRCSNSFPDRYSYKIHAKTHEGEKCYKCDLCPYASISARHLESHLLIHTDQKPFQCDSCDQSFRQKQLLKRHINLYHNPNYVAPVPKEKTHGCPNCNRSFRHKGNLIRHMAVHDPNSNVKEEAIALKLGRQRRIRMMKGFKMEDSFDEEDFEEEEEEEEEEEEDEPENENSALNDTNVVSVDGDDGQQYVVLEVIQIQDGENGEEGDEIDDETMEVDEDFLMGDGIDEEVLDDAPRRTNIKRETVKLTDNDFEYEHDEVEHHDVIDIDEDEDEREHKSTIQLLDIHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01456709;
90% Identity: -
80% Identity: -