Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744476.1:48238006-48242016[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.013 2 10.4 0.6 1 23 143 167 143 167 0.98

2 14 0.003 0.45 12.4 0.4 1 23 184 206 184 206 0.97

3 14 0.0055 0.83 11.5 3.9 1 23 212 235 212 235 0.96

4 14 0.014 2.1 10.2 0.7 1 23 367 391 367 391 0.98

5 14 6.7 1e+03 1.8 2.3 1 23 397 419 397 419 0.88

6 14 1.9e-06 0.00028 22.4 2.3 1 23 425 447 425 447 0.98

7 14 0.00037 0.055 15.3 6.0 2 23 454 475 453 475 0.97

8 14 9.2e-06 0.0014 20.3 2.2 2 23 481 503 480 503 0.95

9 14 0.002 0.3 12.9 0.2 2 23 519 540 518 540 0.94

10 14 2.1e-06 0.00031 22.3 0.9 1 23 555 577 555 577 0.98

11 14 0.00033 0.049 15.4 1.9 1 23 595 618 595 618 0.94

12 14 2.7e-05 0.004 18.8 1.6 1 23 624 647 624 647 0.97

13 14 0.00084 0.12 14.1 0.4 1 23 655 677 655 677 0.97

14 14 0.029 4.3 9.3 4.2 1 23 683 706 683 706 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.013	2	10.4	0.6	1	23	143	167	143	167	0.98
2	14	0.003	0.45	12.4	0.4	1	23	184	206	184	206	0.97
3	14	0.0055	0.83	11.5	3.9	1	23	212	235	212	235	0.96
4	14	0.014	2.1	10.2	0.7	1	23	367	391	367	391	0.98
5	14	6.7	1e+03	1.8	2.3	1	23	397	419	397	419	0.88
6	14	1.9e-06	0.00028	22.4	2.3	1	23	425	447	425	447	0.98
7	14	0.00037	0.055	15.3	6.0	2	23	454	475	453	475	0.97
8	14	9.2e-06	0.0014	20.3	2.2	2	23	481	503	480	503	0.95
9	14	0.002	0.3	12.9	0.2	2	23	519	540	518	540	0.94
10	14	2.1e-06	0.00031	22.3	0.9	1	23	555	577	555	577	0.98
11	14	0.00033	0.049	15.4	1.9	1	23	595	618	595	618	0.94
12	14	2.7e-05	0.004	18.8	1.6	1	23	624	647	624	647	0.97
13	14	0.00084	0.12	14.1	0.4	1	23	655	677	655	677	0.97
14	14	0.029	4.3	9.3	4.2	1	23	683	706	683	706	0.96

Sequence Information

Coding Sequence: atggaaatggatttgtgtcgtatttgtttaaaaaatttgggtgaaaTTTCATTGTTTAGGAATTGTTGCGATTGGGTTCCCGCGGAAACAATAAAGTCTCTCTTTGATATTGATGTAATTTCTAATGTTAATTCACCGGATACGATCTGTACAATTtgtatggaaaatataaaaatagccaATAAAACCAAAGAAAGCATTATTAATGCTGAAATCTTAGTTAGAACTTACTTGGAAAAACTTGAAACAATTCCCGAAGAAGCTGGGAATTCAGAACAGATCAACGAATACAAAGTTGAACAGTTTAAGGATAGttttcaaaaatatgatgATATTTCTACCAAATCAATACAAGAAAATGATATTGTTCAAggcaaatatttagaaaatatcatgACATCGGTTCTACCACCTTTACCTGAACTTTACAAATGTGACGATGGCAAATGTGATTACATAACTAGTACCTACACCCAAATATTACTTCACATGAAGTCGCATCCAGaaCGTCACATACGTATAGTACACGATCGAACCAAtcctaaaaattttatatgtgcCATTTGTAATAAAGTATATTTAGATCGATGTGGGTTAACAGCACACATGAAGGCACATAGCGGCGAAAATCCATTCCATTGTAAACTTTGTGATTTGAAATTCCGTTATGGAAAATCGCTTCGCATACACATGGACAAGAAACATAATTCAAAGGTTGTtgtaaaaaaGAATTGTGGCGATGATGGGGTTCCCGCGGAAACAATAAAGTATCTCTTTAATATTGATGTAATTTCTAATGTTAATTCACCGGATACGATCTGTACAACTtgcatgaaaaatataaaatttgccaATGAAACCAAAGAAAGCATTATCAATGCTgaaatcttaattaaaacttaCTTGGAAAAACTTGAAACAATTCCCGAAGAAGCCGGGAATTGGAAACAGATCAACGAAGACGATGTTGAACAGTTTGAGGATAGTTTTCCCaattatgatgatgatatttCTACGAAATCAATACAAGCAAATGATATTGTTCAATGcacaaatgaaaatgatatgACATCGGTTCTACCACCTTTACCTGATCTTTACAAATGTGACGATGACAAATGTGATTACATAACTAGTACATACACCCAAATATTACTTCACATGAAGTCGCATCCAGatttcaaattatatgaatgtgaaCGGTGTGGGAATGAATATAAATGCAAATCAAGATATACTTATCATGCAGCTGTACACACTACTAATCGACGGTTTACATGTAAAATTTGTGGTAAAGGATTTAAAAGAATAGCAAATCTTCATCAACATCGTTTAACTCACAGAACCAAACGAACACTTAAATGTCCGCATTGTGAAAAAACCTTTTGTCACACAAAAGGGCTAAACTCAcatttattaattcataatgaaaaaaatatcgtttgtaatatttgtgataaaaaatttaaacatagcacatatttaaaaatccaTCAAGCAAAAAATCATGTTACAGCGAGTAGTGGGCGGGAAAAACACATATACGAAAAAATTCCCTGCGAATTTTGTgggaaaacatttttgaaacccaatttaaaaattcacataGATAGCAAGCATTTAGTAAAACCCGCGTTTAGTAAAACCGGAAAACCAAGAAATTTCCAATGTTCATATTGTAATATGGCTTTTGTATCGTCTACCACTTTAACTACACATatgcaaattcatataaaatcaaaagacGTATTATTGGACCCGaaagtaaaacatttatttaaatataagtgTGACAAGTGTGACCAGATATTTAcgactttaaattatttgagaTTACACAAGGTACGACgacattcaaataaaaaacagttcGTATGCGTGCATTGTAAAAAAGAAtttgcatttcaaaattatttagagcGCCACATACGTTTGGTACACGATCGAACAAATCCTAAAAATTTCATATGTACTATTTGTGATAAAGTATATTTAGATCGATGTGGGTTAACAGCACATATGATGGCTCACAATGGAGAAAATCCATTCCATTGTAAATTATGTGATTCAAAATTCCGTTATGGAAAATCACTTCGTATTCACATGGACAAGAAACATAATTCAAAAGTTAATGTAACAGAGTATTTTACTTTCAAAACTGTCaaagttaattaa
Protein Sequence: MEMDLCRICLKNLGEISLFRNCCDWVPAETIKSLFDIDVISNVNSPDTICTICMENIKIANKTKESIINAEILVRTYLEKLETIPEEAGNSEQINEYKVEQFKDSFQKYDDISTKSIQENDIVQGKYLENIMTSVLPPLPELYKCDDGKCDYITSTYTQILLHMKSHPERHIRIVHDRTNPKNFICAICNKVYLDRCGLTAHMKAHSGENPFHCKLCDLKFRYGKSLRIHMDKKHNSKVVVKKNCGDDGVPAETIKYLFNIDVISNVNSPDTICTTCMKNIKFANETKESIINAEILIKTYLEKLETIPEEAGNWKQINEDDVEQFEDSFPNYDDDISTKSIQANDIVQCTNENDMTSVLPPLPDLYKCDDDKCDYITSTYTQILLHMKSHPDFKLYECERCGNEYKCKSRYTYHAAVHTTNRRFTCKICGKGFKRIANLHQHRLTHRTKRTLKCPHCEKTFCHTKGLNSHLLIHNEKNIVCNICDKKFKHSTYLKIHQAKNHVTASSGREKHIYEKIPCEFCGKTFLKPNLKIHIDSKHLVKPAFSKTGKPRNFQCSYCNMAFVSSTTLTTHMQIHIKSKDVLLDPKVKHLFKYKCDKCDQIFTTLNYLRLHKVRRHSNKKQFVCVHCKKEFAFQNYLERHIRLVHDRTNPKNFICTICDKVYLDRCGLTAHMMAHNGENPFHCKLCDSKFRYGKSLRIHMDKKHNSKVNVTEYFTFKTVKVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -