Tcon015932.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744475.1:231303446-231307883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1 1.5e+02 4.4 0.4 1 23 275 297 275 297 0.97 2 20 0.0012 0.18 13.6 1.0 1 23 329 351 329 351 0.99 3 20 0.00086 0.13 14.1 1.6 1 23 357 380 357 380 0.96 4 20 0.00043 0.064 15.0 0.2 1 23 386 408 386 408 0.96 5 20 4.4e-06 0.00065 21.3 1.3 1 23 414 436 414 436 0.98 6 20 0.00027 0.041 15.7 0.1 1 23 441 463 441 463 0.97 7 20 0.002 0.29 13.0 3.6 1 23 469 491 469 491 0.97 8 20 0.1 15 7.6 1.6 1 13 497 509 497 511 0.91 9 20 0.12 18 7.4 0.5 2 21 532 552 531 555 0.88 10 20 0.12 17 7.4 2.7 2 23 558 580 557 580 0.96 11 20 0.32 48 6.0 1.1 1 23 643 665 643 665 0.91 12 20 0.00025 0.038 15.8 1.0 1 23 704 726 704 726 0.94 13 20 0.0014 0.21 13.4 0.1 3 20 732 749 731 750 0.96 14 20 0.035 5.2 9.0 2.8 2 23 766 790 765 790 0.92 15 20 0.016 2.4 10.1 0.4 2 23 797 818 796 818 0.95 16 20 2.3e-05 0.0034 19.0 3.6 1 23 822 844 822 844 0.97 17 20 0.013 1.9 10.4 5.2 1 23 850 872 850 872 0.97 18 20 0.0004 0.06 15.1 1.6 1 23 878 900 878 900 0.99 19 20 0.062 9.3 8.2 5.4 1 23 906 929 906 929 0.97 20 20 0.31 46 6.1 0.4 2 20 931 949 931 953 0.93
Sequence Information
- Coding Sequence
- atggaaaaactagttgaagaaaattcaattcatttatataaaaacgaaGTTGATGGCGGAGACGAGGAGGATTTTGATCAAATCCAAGATGAAATTATCGAGGTAGATCTACACTCGCTGTGTCGTATTTGTGGCAATGTGCACGATACTTTAGTTCCAATTTATGCAGACCAGGGTCTTGAGTTGGAGTTGAGCacaaaaattaactattatttGCCAATTGACGTTAGCGACGATGATATTCTTCCGCTTAAGGTATGTTCCAATTGTGCCACTACAGTCGCATTTTGGCATGAATTCATTACTGAATGCTGTGAAGCTGATAAACGATTTAGTATTATGCTGCAGTCGAGTCTGACAGGGGATACAAAAAAGGATGTAAATTCTGAAGACTTTCAAGAAGAGAttaatgaaatagaaaattccACAGATGAAAACCGAACAATGGATACAGAAACACAAGGGACTGAATATTTAGAAGAACCCGAATATGTAAACGATGAAAATGTTGGAGATAGGTCGGCGCTCGATAATGAAATTCGAAAGCTACCATCAAATGATGATGGATCGTCACTAGAGCAAGATGTAGAGGAACATTCCAAACCGAATAAATCACTCGTCACCATTATAACAAAATCACGATGctcaaaaaacatttcaaccgTAGAAACCTCCCCTAACGCATCGTTCACTTTAGACTCAACAGATTCGGCCACACTTGACGAGCTCGTTAAAAAATCGAATCGTTCGGGAAATATGCGTCTCTCGAACGAAATTCTCGATGAAATAcgtcttaatttaaaattagaagatGATGGCCTGTATAAATGCTATGAATGTGAATTCGATACGGACCAACGTGATGTAATGGAAGGGCATTTAAGGCAGCACTttcaaaacacattaaaaaaattgaaacagacGATGAAGCTTAAGGCGAAATTTTTCgacgaaaataaaatcgaagtaaatggaaaaatattgtaCGAGTGTCCCGAATGTAATAAAAGGTTACATGCGACAAGCACATTTCTATGGCATATGCGTATTCATACGGGTGAGAAACCGTATGTATGCTATATATGTGGCAAAAAATTTCGGGTCTATCATGGAATATCGCGACATATTAAAGAAACGCACATGAAAACCAAAGATTTTGCTTGCGATATATGTGGTCGACTGTTTTCGAACCGGCGTAACGTGGCCGAGCATAGAAATTTACATTCAACTGAGCGGCCGTATACGTGTGACACTTGTGGCAAAGGATTTAAACAGCAGGCCTCTTTGTTTATGCACAAACGATTACATCAGCCACATCAGTTTAAATGTGAGGAGTGTGGACTAGGATTTCGAATTAAAAGTTCGTTGTTAGTACATGCTACTGTGCATACCGGTGTCAAAGATCATGAATGTGATGTATGCCAAAAACGGTTCCGTATTAAACATGAGCTAAATCTTCATAAATTGGTTCATACAGATTTTAAGCCATTTGCTTGCGAAAAGTGCGGTCAGTCTTTTAAACAGAAGCGtttTCAAGTTTTGAACGAGTTTAGCATAAACACTTTGACAAATGAAGCGTTTCAGCCGAATACCGAATGCTCATTCGATTGCGACATCATATTTAAAACGTATCAAGAATTTCGGGAGCATAATCTTGACCAACATCTAAAAACTTGTATGCAGTGTGGAATACATTTCCCTCACTTCGATATGACCCAAGACCACATAAAAACGGTTCATGTGCTCGAAAACGATTGGAAcgatatttgtaaattttgcggACTTCAAACCAACAATTTAGACGAACATATTCAACAGCACAATTTCCATTTGTTAGACGATATCTACTGTTATAGCTGTAAGATGCTGTTTGAGAACGAAATTGCAATCGAAGTCCATTACGCGGTCGTGAAACATGAGTATCGATATCAGTGTATCGCGTGTGATGAAACATTTATGGATCGACAATTGTATCGCCAACATAAATCGAAACATACTACGTTCGTAACAACAAAACTAATGCCGCCACAACGAAAATGTCAGGTCCGTGCTTTATCGAGTTTGATGAAGAATAATTTTTGCGGAAAATCAACACACCAACAAACGATTTTTGAATGTCCAATATGTGAGCATAAATTTGGCCGGAAATACAATATGGAGAAACATGTTGGACTACATCGTCGCGACAATTTCTGTCGCGTGTGCGGTCTCAGTTTTGTAACGGACAGTGCACTTCAGAAACATATGGGCGGTTCGTGCAAGCCTCATCtgaaaatgaaattcgaaaCAACGATAGTATGCCCAAAAACTTCATGTCATCAAACATTTCGATCACGTTTCGAACTGTACCATCATGAAAAAGTCGTTCATCTACAAATGCACACAGTTAAGTGTCCCGATTGcgatttagaatttaaatcaaCATCAATTATGGAAACGCATCGAAAACTCCATAGTCAGGCATACGTGTGCACAGTTTGCGACAAAAAATTTTCCCAGCATCATCAACTAAGGGCGCACGAAACCGTACACACAGGTGATCGACCGTTTGAATGTGATATCTGTATGGAAAAGTTTCGTCATCACAGTAATCTGTATCAGCACAAATTGAGTCACGCGAATACTCGAAAATATAAATGCTTAAATTGTGATTCAGAATTTATGCGCGCGAACACATTTCGTGAACATATGCGAACACACGCCGGAGAGCGACCGTATCAATGTGAAATTTGTTGTAAGAAATATACGCAGTTGTGCGTACTTAAACGGCACATGGAATCGATGCATCGACGATGTAGCCTATGTAAAACAGTCGTGGGTAATAAAATGAAACTACAAGTCCATATGTGGAAAATGCATCCGCTTTCCGATACAGATGGTAAGGGTCACATAGATTATTTGGCGGACGAGCAGGAAGATGAATAG
- Protein Sequence
- MEKLVEENSIHLYKNEVDGGDEEDFDQIQDEIIEVDLHSLCRICGNVHDTLVPIYADQGLELELSTKINYYLPIDVSDDDILPLKVCSNCATTVAFWHEFITECCEADKRFSIMLQSSLTGDTKKDVNSEDFQEEINEIENSTDENRTMDTETQGTEYLEEPEYVNDENVGDRSALDNEIRKLPSNDDGSSLEQDVEEHSKPNKSLVTIITKSRCSKNISTVETSPNASFTLDSTDSATLDELVKKSNRSGNMRLSNEILDEIRLNLKLEDDGLYKCYECEFDTDQRDVMEGHLRQHFQNTLKKLKQTMKLKAKFFDENKIEVNGKILYECPECNKRLHATSTFLWHMRIHTGEKPYVCYICGKKFRVYHGISRHIKETHMKTKDFACDICGRLFSNRRNVAEHRNLHSTERPYTCDTCGKGFKQQASLFMHKRLHQPHQFKCEECGLGFRIKSSLLVHATVHTGVKDHECDVCQKRFRIKHELNLHKLVHTDFKPFACEKCGQSFKQKRFQVLNEFSINTLTNEAFQPNTECSFDCDIIFKTYQEFREHNLDQHLKTCMQCGIHFPHFDMTQDHIKTVHVLENDWNDICKFCGLQTNNLDEHIQQHNFHLLDDIYCYSCKMLFENEIAIEVHYAVVKHEYRYQCIACDETFMDRQLYRQHKSKHTTFVTTKLMPPQRKCQVRALSSLMKNNFCGKSTHQQTIFECPICEHKFGRKYNMEKHVGLHRRDNFCRVCGLSFVTDSALQKHMGGSCKPHLKMKFETTIVCPKTSCHQTFRSRFELYHHEKVVHLQMHTVKCPDCDLEFKSTSIMETHRKLHSQAYVCTVCDKKFSQHHQLRAHETVHTGDRPFECDICMEKFRHHSNLYQHKLSHANTRKYKCLNCDSEFMRANTFREHMRTHAGERPYQCEICCKKYTQLCVLKRHMESMHRRCSLCKTVVGNKMKLQVHMWKMHPLSDTDGKGHIDYLADEQEDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -