Tcon017243.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744476.1:24336776-24338072[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.7e-05 0.0085 17.8 1.4 1 23 143 165 143 165 0.98 2 9 6.3e-05 0.0094 17.7 0.1 2 23 172 194 172 194 0.95 3 9 7.2e-05 0.011 17.5 0.3 1 23 201 226 201 226 0.95 4 9 6.1e-05 0.0091 17.7 0.3 1 23 239 261 239 261 0.94 5 9 3.6e-06 0.00054 21.6 3.7 1 23 267 289 267 289 0.99 6 9 0.00073 0.11 14.3 1.0 1 23 295 317 295 317 0.98 7 9 0.0036 0.54 12.1 0.2 1 23 323 346 323 346 0.97 8 9 2.4e-05 0.0036 19.0 4.0 1 23 352 374 352 374 0.99 9 9 3.5e-06 0.00052 21.6 0.9 1 23 380 402 380 402 0.97
Sequence Information
- Coding Sequence
- ATGCGTTTTATATACGATAAAAGTAATAAAGAAATAGCTGAAATGTTGTATAGATATGCTTCGATTGAGCTGGTCCCAGGTGATGGAATGCCCGAAGAAATTTGTTCTCCATGTCTATTAACATTTATACGATTTCATGAATTTTGTGTTATGTGTGCCAAATCGGATACCATATATCGCGAACAAATTCGACTAAAATGTGTggtgaaattagaaaaaaacgatGAACCTACAGTTAATGTGGTAGATATCGCCCCGGATCCCATTAAAGTTGAATCAATACCATCTGAAAGCGATTGTAAAGTAGAACAATTAGTTAAGGAAGATGCTGGCATTTCGgaggatgatgatgatgatgatgatttagcATGCGATTCAGAAGATCCCGAAGACAATAAGCTtgaatcaaaaactaaaaatagtatATTCCCGTgcccaaaatgtaataaaaaattctatcgTGAACGTCGACTGGAAGGTCATCTGCGACAACATCAAGGTCTTAAGCCGGCTGTATGCAACATTTGCGACAAAGAATTTTCTAAATGGCCTGCCCTCGACACGCACATTATGTACACGCATAATAATGCGGAACGAAAATTCATCTGTGACGAACCAGACTGTGATAAATCGTATATTATGAAACAATCGTTGACCACACATCAAAAGCGAGTCCACACAAAAACCTTGAACAATCTAAAACCCGAATCTAGCTATATATGCGAATCGTGTGGAAAATCCTTTGCCACCATAGCAACGTTAAAGAAACACTCGTTTATACATAGTGGCCAGCGACCGTTTAAATGCACCATCTGCCCGAAAAAATACATTACTAACCACAAGCTGAAGGAGCACATGATGAGGCATGAAggtataaaaaatttcgtatgtCCTATTTGTGGCATGCGAAAGACTACGATGCATGAACTTAAAATTCATATGAATTATCATACGCGTGAAAAAATGTACCCGTGTAAATCGTGTACGGCAGTATTTTCGAGTCCGGGTAATCGTGGCCGGCATTTTAGAATTGTTCATTGTGGCATAAAAGCGTATCAATGTTCGCATTGTGAACGCTCGTTTGGTAAGGCTGAAACGCTGAAGCATCATGTAATGACGCATACAGGAGAAAAGCCGCATGTATGTACGGCGTGCGGTAAACGATTCATACAGCTCGTTGCACTACAAACGCATATGAAGACGCACGACAAATCACGTTAG
- Protein Sequence
- MRFIYDKSNKEIAEMLYRYASIELVPGDGMPEEICSPCLLTFIRFHEFCVMCAKSDTIYREQIRLKCVVKLEKNDEPTVNVVDIAPDPIKVESIPSESDCKVEQLVKEDAGISEDDDDDDDLACDSEDPEDNKLESKTKNSIFPCPKCNKKFYRERRLEGHLRQHQGLKPAVCNICDKEFSKWPALDTHIMYTHNNAERKFICDEPDCDKSYIMKQSLTTHQKRVHTKTLNNLKPESSYICESCGKSFATIATLKKHSFIHSGQRPFKCTICPKKYITNHKLKEHMMRHEGIKNFVCPICGMRKTTMHELKIHMNYHTREKMYPCKSCTAVFSSPGNRGRHFRIVHCGIKAYQCSHCERSFGKAETLKHHVMTHTGEKPHVCTACGKRFIQLVALQTHMKTHDKSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -