Tcon028588.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula confusa
Gene Symbol
-
Assembly
GCA_963556175.1
Location
OY744476.1:212640435-212643280[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.024 3.5 9.6 0.1 1 23 180 203 180 203 0.95
2 15 1.3e-06 0.00019 23.0 0.5 1 23 213 235 213 235 0.98
3 15 0.14 20 7.2 0.0 1 23 240 262 240 262 0.97
4 15 0.00025 0.038 15.8 0.9 1 23 268 290 268 290 0.99
5 15 1.9e-05 0.0029 19.3 2.4 1 23 296 318 296 318 0.98
6 15 4.3e-05 0.0064 18.2 1.5 1 23 324 346 324 346 0.98
7 15 3 4.5e+02 3.0 0.8 2 10 353 361 352 373 0.86
8 15 1.8e-05 0.0027 19.3 1.6 1 23 379 402 379 402 0.97
9 15 0.0017 0.26 13.2 1.6 1 23 553 576 553 576 0.96
10 15 8.3e-05 0.012 17.3 1.8 1 23 584 606 584 606 0.98
11 15 3.5e-05 0.0052 18.5 1.1 1 23 611 633 611 633 0.98
12 15 0.00044 0.066 15.0 0.5 3 23 641 661 639 661 0.98
13 15 0.0062 0.93 11.4 3.6 1 23 667 689 667 689 0.98
14 15 0.0065 0.98 11.3 0.9 1 23 695 717 695 717 0.98
15 15 0.77 1.2e+02 4.8 5.5 2 23 724 745 723 745 0.96

Sequence Information

Coding Sequence
ATGTGCCGAACATGTTTAGCATCGACTGTAGATTTACACTCAATATTCGATGAAATCAATATAATTAGTGAACCAGCAGAAATTATTCAAATGATTCTTCTATGCACTGGACTTGAGATTTCAAAGTATGATGAGTTTTCACATAGTATTTGTTATTCGTGTACTGATGATTTGATTAAATCGTATGAATTCCGAAATAAGTGCTGGAAATCTCAACTATTTTTGATGgagcaatataaaattgatGGGAAATATGATGTAAAACAAGAACTGGATATTAACGATGTAAAAACAGAGACATTCGATGATGAGCTTGAGATGCATGATAGTCTTGCTAGTGAAATAAATAATGAGGAAGTAAATTTTATGATTGAGTATATTGAGGAAACAGATTTGGATGAAGTGAAACCAAATATAAGCGAAGAAAATATCTTAACGACGGCACCGAAACCAAAACGTATATTACCTAGTAGGGATGAAGATTTTTtagaatatgtaaattatacatCGGATGAGACATGTCTTTATGGTAAACGATACTTTTGTTTGATGTGTGATCAAGTGTACGTGCGACCAATGACAATTCGAGatcatttgattaaaattcataaaattacgttaaaaaaacgCGATGGATTCGAATGTAAAATATGTGGTAAAGTATTCGATCGAAAGGATCAAATGGATAGTCATCAAAATGTTCATGCGCCTGCCAAATATATTTGTGATATATGTGGTGCATGGCTCAAAGGTAAAGACACTTTAGCGGAACATAAGCGAATACACACTGGAGAAAAACCGTACAAATGTCAGATTTGTGATTTTCGATCGGCCCAGAAAAGTAGCATGGAAGTACATAAGCGTGTCCATACTGGTGAAAAACCGTACAAATGTCATATTTGCGGTGTAGCGTTTAAAACTTCAAGCAGTCGCGCAAACCATCGTAGGCAGCATTCAGACGAACGTccttttgaatgtttaatttgctcgaaaacttttaaaactcgTGGCGTATTTAGAGGTCACATGAAAACACACGATTCCAATCAGTCGATCGAATGCGAGTTTTGTCATAAAAAGTTTCCGCCCGGAcgaataaaattccatttgcgACAACATTCGGCAATGCCAACGTATAAATGTGATTTATGTGGTAAAACATTTTACCAGGGGGCCAGTTATCAAACCCATATGAAAAATCGGCATTTTAAAGATattgaaATTTCTGAATATGATTCAATTTCGTGTGCTATATGTACAGATTgcattgattttataataattgctTTTAAATATCGAAAACAATGTTGGAAATCGCATATGAAACTAATGACTGAGTTAAAAGAACAATACAAAGCGACATGCCTGGAAATTAAAACTGGAGAGACGACAGTGCAACAAAACCCGATACGTAAAACTATCCATGATAGCCGTCAAAGCGATGATGATAAATGGTTCAGAACGGAGAATATAACAGTAGAATTAGTAGATGTTTGTTCGGAGATTCAGAACAAAAAGttatctaaacaatttttaggtGTAACAAAACAACGACGCAATCGAATGATGTGCAATGATAATGTACTACCACACGGTTATGAAGATATGGTCGATTATACTAACATCGCGATGGACGATatgaccaaaacaaaaacatatcgGTGTCGGATATGTAAGTTTAGATACAAGAGAATTGGATCACTTCGCTCCCATCAAGAAAATATACATCGCCTTCAATTCAAAAACCAGTACGAGTGTAATAATTGcggcaaattttttgtttcccaAAAACAGCTAAACTTTCATGAAAGAATGCACGCTGATAATCAATTCGTGTGCCaattttgtggtaaaaaatTCAGACTTAATTCAAGGCTAGCGGTACATGTAAGACGACATACGGGAGATAAACCATTTGGATGTGATCAATGTGCTTATCGTACGATCACTAAATCTGATTTGGTCACTCATATGCGTACACATACCGgcgaaaaaccatttaaatgttttcattgtGACTCAGCCTTTTCTACAGTTAGTCATAGGGCAGCTCATGTTCGCAATCATTCAGGTGAAAGACCATACAAGTGTATGATTTGTTTGACTGCGTATAAAACAAAGGGCGTTTATAAATCGCATATGGATAGTCACGATCCGAAAAAATCGATAGTGTGCGAGGTATGTCATCATGTGTCGAGTAATCGTAAGAATCACATGAGACACATTAAACAACATCGAAGTAAAactatttcgtaa
Protein Sequence
MCRTCLASTVDLHSIFDEINIISEPAEIIQMILLCTGLEISKYDEFSHSICYSCTDDLIKSYEFRNKCWKSQLFLMEQYKIDGKYDVKQELDINDVKTETFDDELEMHDSLASEINNEEVNFMIEYIEETDLDEVKPNISEENILTTAPKPKRILPSRDEDFLEYVNYTSDETCLYGKRYFCLMCDQVYVRPMTIRDHLIKIHKITLKKRDGFECKICGKVFDRKDQMDSHQNVHAPAKYICDICGAWLKGKDTLAEHKRIHTGEKPYKCQICDFRSAQKSSMEVHKRVHTGEKPYKCHICGVAFKTSSSRANHRRQHSDERPFECLICSKTFKTRGVFRGHMKTHDSNQSIECEFCHKKFPPGRIKFHLRQHSAMPTYKCDLCGKTFYQGASYQTHMKNRHFKDIEISEYDSISCAICTDCIDFIIIAFKYRKQCWKSHMKLMTELKEQYKATCLEIKTGETTVQQNPIRKTIHDSRQSDDDKWFRTENITVELVDVCSEIQNKKLSKQFLGVTKQRRNRMMCNDNVLPHGYEDMVDYTNIAMDDMTKTKTYRCRICKFRYKRIGSLRSHQENIHRLQFKNQYECNNCGKFFVSQKQLNFHERMHADNQFVCQFCGKKFRLNSRLAVHVRRHTGDKPFGCDQCAYRTITKSDLVTHMRTHTGEKPFKCFHCDSAFSTVSHRAAHVRNHSGERPYKCMICLTAYKTKGVYKSHMDSHDPKKSIVCEVCHHVSSNRKNHMRHIKQHRSKTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-