Tcon039790.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744477.1:143963986-143965907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3e-05 0.0045 18.7 4.5 1 23 59 81 59 81 0.98 2 13 0.003 0.45 12.4 0.5 2 23 86 107 85 107 0.95 3 13 2.3e-05 0.0035 19.0 0.8 1 23 112 135 112 135 0.96 4 13 0.0038 0.57 12.1 5.0 1 23 141 163 141 163 0.97 5 13 0.0039 0.58 12.0 3.2 1 21 268 288 268 289 0.96 6 13 0.0034 0.51 12.2 1.9 2 23 305 326 304 326 0.96 7 13 0.00015 0.022 16.5 0.1 1 23 332 355 332 355 0.96 8 13 0.00017 0.025 16.3 1.0 3 23 367 387 365 387 0.95 9 13 9.4e-05 0.014 17.1 2.8 1 23 393 415 393 415 0.98 10 13 2.5e-05 0.0037 18.9 0.3 2 23 421 442 420 442 0.97 11 13 5.3e-06 0.00079 21.1 0.3 1 23 447 469 447 469 0.98 12 13 2.2e-05 0.0033 19.1 0.2 1 23 475 498 475 498 0.97 13 13 0.00046 0.069 15.0 1.1 1 22 504 525 504 528 0.92
Sequence Information
- Coding Sequence
- ATGAAACTGCGAGAGATTAATGATGTTGGTCCTGTTGATATAGTACAATCACTTGATAGTAGTAATGGAGCATATTCTGAACATGATAGTGAAACTAGTATTACCGATGATTCTGATAATGATATGAGCCAAGTAACAGATGAACAATTATTCAATTCGTCGGACGATGATGgtcataaatgtttaaaatgtttcaaaatgttCGCTACTTCTGCAAAACTGAAGAAACATCAACGGATTCATACGGGAAATTGGAATTGTCCGGAATGTGATCGCGTTTTAGCAAATAAACATTCGTTACGTTTCCATATGATATTGCACACTGGTAAGCCCCATGAATGTGCCGTATGCGAGAAACGATTTGTATCTATATACGAATTACGGCGGCATATAAAAGTATATCATAAGAATGGCAAAAGTCACGTGTGTGATCAATGCTCAAAGAGGTACTACACTTTTAACCaactaaaaaatcataaacttacTCATTCAAAACCAACTGACAAAGAATTTAAGCCGAAGTATGAAGATGTTTGCGACCAtgaagataaaaaaatggatgaagAACTAATTATTGTTGTCGACTGTGTAAACGTAAATGCTTCCATACATAACGAAGACATGAAAATTGAGACGAGGGTGGATACAATTGACGCGCCTCTTATCAATCCAATGATTAAAACGGAACATGATTCGACTACAGACAGCATTATTGAAATGGAAAACGATGAACAACCGTTTAGCGATTCAGCCAATGAAATGTCGTCCGACAGTACAGattcaaaacaagaaaaaacattttaccgtTGTAAAAGTTGCTTTAAGAAATTTCGTCTTAAAAGTAATTATTTGAGccatcttaaattaaaattaaactgtaaGGCAGATTTGAATACGAAGACAAATCCACAAAAATGTGAGCATTGTAATACAATAagtgataatttgtatcaaTTAAGGAAACATCTAGAACTTCATTTGGATAAGGAACCGTTTAAATGTCCGGCGTGTGGAAAAGTGTACAAATCTTGGATTAAATTAGCAGGTCACAAACGCCAGGTCCATTCATCAAAACCAGTAACACGTAAACCACATTTATGTACCCTATGTGGAAAAGGATTTAGCTCTTCAAAACTATTAGATGATCATTATATGGTACATCAGGGCGTACGAAATTATAAATGCGATCAGTGTGAACGATCGTTTTGTACGATTTACGGACTAAAACAACATCTAACGATTCATACACGAGATGCGCTGCAGTGCAGCGAATGTGGAaaaattttggcaaacaaaATGTCCTTAAAAAATCACATGACCATACATTTTGGAAAAGATTACCCATGCACTATGTGTGATAAACGATATCCTGATACGGCAACATTAAATAGACATCTAAAAGTGCATCGGGGCGAACGGAATTATGCATGTGATCAATGTGGGAAGCGATATTATCGAGGCGGTGATTTAAACGATCATATACGAAAAATACATGAAAATCCCATGGATTTTAAATGTGAAGTGTGTGGGAGTGGATTTGGCCATAGAAGAGCATTAAAAAAGCACGTTCGgtTGAAAGATCATGAGAAAAAATGCCATACAAATGCGACAAATAATCATATTTTATCGCCTGTTATCACACCGAGACTGGTACAGTCGGAAACAGCCGAAATTCCAGTTTCAAATTATAGTCAAATAACCGGGTTAATGGCAGgcctttttcaataa
- Protein Sequence
- MKLREINDVGPVDIVQSLDSSNGAYSEHDSETSITDDSDNDMSQVTDEQLFNSSDDDGHKCLKCFKMFATSAKLKKHQRIHTGNWNCPECDRVLANKHSLRFHMILHTGKPHECAVCEKRFVSIYELRRHIKVYHKNGKSHVCDQCSKRYYTFNQLKNHKLTHSKPTDKEFKPKYEDVCDHEDKKMDEELIIVVDCVNVNASIHNEDMKIETRVDTIDAPLINPMIKTEHDSTTDSIIEMENDEQPFSDSANEMSSDSTDSKQEKTFYRCKSCFKKFRLKSNYLSHLKLKLNCKADLNTKTNPQKCEHCNTISDNLYQLRKHLELHLDKEPFKCPACGKVYKSWIKLAGHKRQVHSSKPVTRKPHLCTLCGKGFSSSKLLDDHYMVHQGVRNYKCDQCERSFCTIYGLKQHLTIHTRDALQCSECGKILANKMSLKNHMTIHFGKDYPCTMCDKRYPDTATLNRHLKVHRGERNYACDQCGKRYYRGGDLNDHIRKIHENPMDFKCEVCGSGFGHRRALKKHVRLKDHEKKCHTNATNNHILSPVITPRLVQSETAEIPVSNYSQITGLMAGLFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -