Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744476.1:3883374-3886844[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0011 0.17 13.7 2.0 2 23 238 259 237 259 0.97

2 16 0.27 41 6.2 2.5 1 23 320 340 320 340 0.92

3 16 0.00012 0.018 16.8 0.8 2 23 347 369 347 369 0.97

4 16 0.00021 0.031 16.1 4.4 1 23 381 403 381 403 0.98

5 16 0.00029 0.044 15.6 1.1 1 23 409 431 409 431 0.99

6 16 1.4e-06 0.00021 22.9 1.1 1 23 437 459 437 459 0.98

7 16 0.00075 0.11 14.3 0.6 2 23 500 521 499 521 0.96

8 16 7.7e-05 0.012 17.4 1.3 3 23 684 704 682 704 0.95

9 16 0.00031 0.047 15.5 0.6 1 23 710 733 710 733 0.96

10 16 0.023 3.5 9.6 1.7 2 23 791 812 790 812 0.96

11 16 2.3e-05 0.0035 19.0 3.5 1 23 929 951 929 951 0.98

12 16 0.00039 0.058 15.2 7.1 1 23 957 979 957 979 0.96

13 16 3.3e-05 0.0049 18.5 1.8 1 23 984 1006 984 1006 0.98

14 16 0.00034 0.051 15.4 1.1 1 23 1018 1040 1018 1040 0.97

15 16 0.00018 0.026 16.3 2.5 1 23 1046 1068 1046 1068 0.98

16 16 5.7e-05 0.0085 17.8 1.7 1 23 1074 1096 1074 1096 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0011	0.17	13.7	2.0	2	23	238	259	237	259	0.97
2	16	0.27	41	6.2	2.5	1	23	320	340	320	340	0.92
3	16	0.00012	0.018	16.8	0.8	2	23	347	369	347	369	0.97
4	16	0.00021	0.031	16.1	4.4	1	23	381	403	381	403	0.98
5	16	0.00029	0.044	15.6	1.1	1	23	409	431	409	431	0.99
6	16	1.4e-06	0.00021	22.9	1.1	1	23	437	459	437	459	0.98
7	16	0.00075	0.11	14.3	0.6	2	23	500	521	499	521	0.96
8	16	7.7e-05	0.012	17.4	1.3	3	23	684	704	682	704	0.95
9	16	0.00031	0.047	15.5	0.6	1	23	710	733	710	733	0.96
10	16	0.023	3.5	9.6	1.7	2	23	791	812	790	812	0.96
11	16	2.3e-05	0.0035	19.0	3.5	1	23	929	951	929	951	0.98
12	16	0.00039	0.058	15.2	7.1	1	23	957	979	957	979	0.96
13	16	3.3e-05	0.0049	18.5	1.8	1	23	984	1006	984	1006	0.98
14	16	0.00034	0.051	15.4	1.1	1	23	1018	1040	1018	1040	0.97
15	16	0.00018	0.026	16.3	2.5	1	23	1046	1068	1046	1068	0.98
16	16	5.7e-05	0.0085	17.8	1.7	1	23	1074	1096	1074	1096	0.97

Sequence Information

Coding Sequence: ATGGAACAATATACATTGGCAATTAAAGAGGAAAACGAATATGAAACTACAGAAAACGGTATTATCAATGGAAGCATTAGTGGCCTCGGCGAGAATATCACAATTGCCCAGTATGAAATTCACCCACAACATCAAATGCATCATGGTACATTGATGCTACAACATCCACAAATTATTATACATCAACAAAGAATATCACAACAACACATTATatcgcaacaacaacaacaacatcatcacCATCAATTACAACAAGTTCACCATATTAGGCCATCGTCGACGCCAAATCATTTACATCATACAATTCAAATCCACAATGAGGAAGAGTCAAACGGCAGTAATtccatattatatacaaataatactcATTCGCAGTGTACTACGCCGCATATTCAGATACAAATTCATCGAGCAGATGGAAGTAGACCTAATTCAGTGCAGCAAATACCCGCAGAGTTGATACAAGTATCTAGTCCGTTACAATTACACTCACCACATTATCACAATGATCAacatcaacaaattattttacatcaGCCAATGAACACAATGGAGGAGGAACTACAACCAGAAGAACTCGAGATAGCGCATCAAGAAGAAATTATTACGATACCCGATCATATGATGCATGAAGCATATCCCGAATTAACTATGACTCCTCAGGATGAGGAAGAACAATATCTACCCCAAgataatataaacattaatatCGTATGTAAAGTATGTaagaaaaattttgttggtgtaTGTAATTTTACTGAACACATGAAAACGCATATGCCACACGAACAAATTTACGAAGAAGATGTTTTGGGTGAAACTCGTATAGAAATGGTCGATTTATCCGAAACACTTAATATGGATAAAAGTGCATACCCTTGtgcattttgtaataaaaaatatatttggcaTAAATTCTTGGTGACACATTCCAAGTGCCATAAAACTCCTGCACCATTTATATGTACGATATGTGGTGAGAGTTTCGAGTGTTTGTACTATGATCATATGAAGACACACATATTGAGTGATGGACGAACTTGTTCgaaatgtaatgaaaattttgcgACACTCAAAGCGCTAAAGCAGCATGTTAGAACAGTTCATAATCCTCATCTTAGTGGAGATGctaatcatcagcataaatgtAGTATATGTGGGAAGCATTATAAAGCGTTGTCGTATCTCAAAGAACATGAACGAACGCATACTGGAGAAAAACCATATAAATGTGATGTTTGTGGAAAAGCATTTGCCAAATATGGTTGTTGGGCCGAACACAAAAAAACCCATTCGATTGTTAAAGCCTTTAAGTGCCCTATGTGCCCTAAAGCCTTCACCAAAAGAAGGTATCTTAAAGCACATCTGCTCAGGCATCCGAAAACGTTAGATCTCGATAAGATATTCGTTGAAGATCGAGACGGTGAGCTGCCTagcagaaaatttttatttgcccCGAATAAACCAAAGCCCGCTCCAAAAGTGCAGCCAAAATTAGAATGTCCTATATGTTATaaggagtttaaaaaaatgcggTATTTACGGTCGCACGTAATACGTCATCCCGAAGATTTTGTACGGCAGAAACTTGGTTTAACGCCTGGAACGCCTATACCACCTTTATTACCAGCTGTTCTAAATCGAAAATCTGCTATGATGGCTGCCGCAAATAGTAATCATCAGGAGCTAACGAATATTCAAATTGAAACCAAACTTGAAATGTATTCTGACAGCGAATCGACTGATGATGAAAATATGGGTGTGGAAGAACAGGATGCGGTTGGTCTAGAAAAAGGGGAAGTCAAAGCGGATATAGAGTACCCGGAGAATGATTTCTTTACTAATGAAGAATTTCATAACGAGGATCAAGAAGTGTATGAAGATGATACGATCAAGCAGCAAATTCAAAGTCCAGAAGAAACTAACAACTTCACGTTTCACGATGCAAGTAATAATTATACTGAAGTAATTGATAATAACATAAAACCTACTATCGAGGAAATTACACCAAGTGTAACGGAAGAGCTTGTCGAACCAACCATAGTTTGTTGTAGCATTTGCCAAAAGTCATTCACCCAAGCTAAACTACTGCAAGATCACGAACAAGTTCACTACAATGAAAATCCTTATAAATGCAGCTATTGTAAGAAAGTATTTGTGATGTGGGTGCGCTTTGAGGATCATATGTCATTGGAACATAGAGATTACCCGGTTCTTATCGATCCTGACgatgataaaaaattgaaaaccctTAACCATTATTTTAATAGAGAGGAAAAATCGTTTACATGTAGAACATGTGAGGATACATTTTTAACCGAAAACATGCTTGAGGAACATGAGGGTATGCATTTAGGTGAGGAACCATTAAAATGCCATGTGTGTAATGAACATTTTGCAATACAATCGAAGTATGCGGAACATGTGAAAGCGCATGGTCTAGATACATCTGAACATGAAGACGAAGGGACAGAAAACGAGGAAGGATTACAAAGTGGAAATGATGTTGAAATCCAAAGCGAGAATCACACAAGTCAACATAATGGGAATGAAGGACGCGTGCTAAGAAGTAGAACGAAAAAATCGGATTTACGTAATCACCGGATACGAAGATTGAGAAAAACGAGACAGAAAATGGTAATTAAAAACGAAGAGGAATCCGAACATGCTGATCAAAGTAGTGATGAATATCAAGCAGATTCTGATGATTTGGAAGAGGAGAATGATAATGAAGAAGCAAATGaggtaaatgaaaaaaaagtagttggaaaatccaaaaaacgattcaaatgtaaaatatgtgGAAAAATGTATTCAACCCACTTTTATCTAAAAGAGCATTTATCGATACATGCAGGGAAACGACCTCACAAATGCCACACGTGTGGCAAAACATTTGCCACCTCATCATGTTATAGAGAGCATTTGGAATTGCATTTATCGCAGAAACACAAATGTGACGTGTGTGGAATGACCTTTGCGGTATCTCGATATTTAAGAGCCCATAAGCGAAGACATGCTCAAAGAACTTTACCGGATGgtggtaaaaaatataactgtGCACAATgcgaaaaaaaatacaaatcaaagGCAGCACTAAGTGAGCACATGAAATTTCACTCAGGCGAAACACCTTTTACGTGTTCTTATTGCAATAAAGTTTTCATGCTCACCTCGTCATTTCGCGACCACATGCTTAAACACGAAAATGTCGAAATGCATCAGTGCCCATTCTGTCCAAAAAGCTTTATTAAAGCACGTTATTTGCAACAGCATTTGGTGCGGCACATTCAAAAACTGGACACTGAAACTAGTACAGATCTAGCAAATAATCCGAAAAATAATGAACCCAAAACAGAATTTGATGACGAGTTTGTGGATAGTCCGACTAGCACTACCAGTAGCGATAATGTTTcagaagatgatttttttaagacGTCACCACCCGAAGAATGTCaaactgttttataa
Protein Sequence: MEQYTLAIKEENEYETTENGIINGSISGLGENITIAQYEIHPQHQMHHGTLMLQHPQIIIHQQRISQQHIISQQQQQHHHHQLQQVHHIRPSSTPNHLHHTIQIHNEEESNGSNSILYTNNTHSQCTTPHIQIQIHRADGSRPNSVQQIPAELIQVSSPLQLHSPHYHNDQHQQIILHQPMNTMEEELQPEELEIAHQEEIITIPDHMMHEAYPELTMTPQDEEEQYLPQDNININIVCKVCKKNFVGVCNFTEHMKTHMPHEQIYEEDVLGETRIEMVDLSETLNMDKSAYPCAFCNKKYIWHKFLVTHSKCHKTPAPFICTICGESFECLYYDHMKTHILSDGRTCSKCNENFATLKALKQHVRTVHNPHLSGDANHQHKCSICGKHYKALSYLKEHERTHTGEKPYKCDVCGKAFAKYGCWAEHKKTHSIVKAFKCPMCPKAFTKRRYLKAHLLRHPKTLDLDKIFVEDRDGELPSRKFLFAPNKPKPAPKVQPKLECPICYKEFKKMRYLRSHVIRHPEDFVRQKLGLTPGTPIPPLLPAVLNRKSAMMAAANSNHQELTNIQIETKLEMYSDSESTDDENMGVEEQDAVGLEKGEVKADIEYPENDFFTNEEFHNEDQEVYEDDTIKQQIQSPEETNNFTFHDASNNYTEVIDNNIKPTIEEITPSVTEELVEPTIVCCSICQKSFTQAKLLQDHEQVHYNENPYKCSYCKKVFVMWVRFEDHMSLEHRDYPVLIDPDDDKKLKTLNHYFNREEKSFTCRTCEDTFLTENMLEEHEGMHLGEEPLKCHVCNEHFAIQSKYAEHVKAHGLDTSEHEDEGTENEEGLQSGNDVEIQSENHTSQHNGNEGRVLRSRTKKSDLRNHRIRRLRKTRQKMVIKNEEESEHADQSSDEYQADSDDLEEENDNEEANEVNEKKVVGKSKKRFKCKICGKMYSTHFYLKEHLSIHAGKRPHKCHTCGKTFATSSCYREHLELHLSQKHKCDVCGMTFAVSRYLRAHKRRHAQRTLPDGGKKYNCAQCEKKYKSKAALSEHMKFHSGETPFTCSYCNKVFMLTSSFRDHMLKHENVEMHQCPFCPKSFIKARYLQQHLVRHIQKLDTETSTDLANNPKNNEPKTEFDDEFVDSPTSTTSSDNVSEDDFFKTSPPEECQTVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -