Tcon028721.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744476.1:215319447-215321753[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.085 13 7.8 0.6 1 23 123 146 123 146 0.92 2 12 0.37 55 5.8 3.3 2 23 287 309 287 309 0.93 3 12 1.6e-06 0.00024 22.7 5.6 1 23 315 337 315 337 0.98 4 12 6e-06 0.0009 20.9 1.8 1 23 343 365 343 365 0.98 5 12 5e-07 7.4e-05 24.3 3.0 1 23 371 394 371 394 0.95 6 12 2e-06 0.0003 22.4 0.3 2 23 408 429 408 429 0.97 7 12 0.25 38 6.3 4.4 2 23 436 457 435 457 0.96 8 12 2.7e-06 0.0004 22.0 0.4 1 23 463 485 463 485 0.96 9 12 2e-06 0.0003 22.4 0.7 1 23 491 513 491 513 0.98 10 12 6.9e-06 0.001 20.7 0.8 3 23 521 541 519 541 0.96 11 12 2.8e-07 4.1e-05 25.1 1.2 1 23 547 569 547 569 0.99 12 12 0.0014 0.21 13.4 1.5 1 23 574 597 574 597 0.97
Sequence Information
- Coding Sequence
- ATGGATTCGACGACGGGAAGCACCACAGTTCTGAAACTAGAATTAGTGTGTCGTACATGTTTAAATGAATCAAATAATATGAAACCGATATTTATAAATGACGGTGACAATATATGCAAAATGTTGCAGTCATGTTCCGGACTAGACATTCATGCAATGGATGGATTGCCCTCAAATATATGTtcgaattgtttaaataaagtgCATATTTCATATGAGTTTCGGCAGCTGTGTGAAATTTCGCATAAtgcgttaattaattttatgggaCCTAAGTTAAATGGTGAATTAGAGTCGGAAGTTGAAATCGGGTCACAGATTGAGACAACGCAAAACGATACAAAATTGATGactgaatttgaaatttataagtGTAGTATGTGTCCAAATCAATATACATTGCTAACGCAGTTACAGGACCATTTTATAAACGATCATCCAGATGAATCGTATGATACGAAATTAGAGGACTCGAATTTGCTTGTAATAAACGGGAGTACGGGTGAAGTATCCGAGGGGAATAACGGTTCGAatgtaaatgaaataaaaaatgatttggtcGAAGAGAAATACATGATTTTTAGCGAGCCTGACGTTtctgtcataaattttaaagataatcAAGATGGGCTCGTCGATGAAGACGATGAATTAAACCAGAGTGACGAAGAATCAGATAATGAAAGTGATACCAGTTTTGGAAATGGAATGCTTATCTATGACGAAGATGATGATGACGgagaagatgatgatgatgctgatgatgatgaggCACTAAGTGACGATAAAGAAGGTAAAATAAACACGGGCCGTAAAGTAAAATCGTCGGACGATGGTGGTAATCAAGGGGAACTTCCGACGTGTACGCCGTGTAACTTAACGTTCGAAAAAAAGTCAAGATATTTTCATCACATGGAATCGCAACACAAGGAAATTAAATTGCATCAATGCGACCAGTGTGATAAAAAATTCTCGCGGCCAACACATTTACGGCGTCACCAAGTTACACACTTAGATGTGAAACCATATCCTTGCGAGCAGTGCGATAAGCGTTTCTCCCGCCTCGATCATAGAAACATCCATATGCGGGCACATTCGAACATTAAACCGTACAAATGTGATGAATGTGATAAGAATTTTACTAGACCTGAGCATTTACGAAGGCATCGCGAAAATCGACATGGTGCTGCGAGCTTAAAGCCGTCACCACCCAAAACAGAAGTTTGCGAAATTTGTCAAAAAGCTTTTACGAAACCGAAATATCTCCAAATTCATATGAAAGTGCATCGGGCCGTTAAAGAATGGACGTGTAAATTTTGTCAACAAAAATTCAACTCAAAACAGGACCACAACGACCATCAGAAGGTGCATGTAAATGAACGACCATTCTTATGTTCTGAGTGTGGACTACGATTTGTCCGTAACGACTATCTTGTGATCCATATGCGACGCCACAAAGGTGAGAAACcgtataaatgtaaattttgtggTAAAGGATTTCCTCGTGCTACCGACCTAACGGTTCATGAACGATATCATACCGGAGAAAAAACTCATTTGTGTACGATATGCGGCAAAGGATTTCAACGTGCCTATAATCTATTGGTTCATACGCGAGTACACACAGGCGAGCGACCATATAAATGTCCTCATTGCGATAAAAGTTTTGCACAGGGGAATGATTTAAAGGCGCACGTACGACGACACACAGGCGAACGATTCAAGTGTGATATATGCGGCGATGGTTTTATTCAGGGCTACCATTTAACACAGCACAAACGTAACCAGCATGGAATCGATATGAAATCGCATATCAGACGAGTTGAAAAGTTTATCACACCAATGGCCCAGCAACAACGTGTATTAGAGCAACAACAAATAGCTCAAGAGCAAATAACGAATCCTATCGTGCCTACTGTAGCGGAACAATTGCTGCAACCAATAGATCATCAAGACACTAAGTcgaatattccaaaattaacaataattccAGAGTTTGAATTACGACATCAAGAAATTATTGCAATAACATCGCCGTTGCCCCAGTTACATAATCAGCAGCAGGAGTCGCCACAACACCAAATTTTGTATACCTCTCAAACGCAACAACAAATTCCGAGTACTATGCATATTCTAGATGTGAACGAAACGATTGTGAAAATGGAGCAGATCgatgaaattaatcaaatctcAACGATAATGAGCTATCCGAATTACGAGAAAGGAGACTGTTAA
- Protein Sequence
- MDSTTGSTTVLKLELVCRTCLNESNNMKPIFINDGDNICKMLQSCSGLDIHAMDGLPSNICSNCLNKVHISYEFRQLCEISHNALINFMGPKLNGELESEVEIGSQIETTQNDTKLMTEFEIYKCSMCPNQYTLLTQLQDHFINDHPDESYDTKLEDSNLLVINGSTGEVSEGNNGSNVNEIKNDLVEEKYMIFSEPDVSVINFKDNQDGLVDEDDELNQSDEESDNESDTSFGNGMLIYDEDDDDGEDDDDADDDEALSDDKEGKINTGRKVKSSDDGGNQGELPTCTPCNLTFEKKSRYFHHMESQHKEIKLHQCDQCDKKFSRPTHLRRHQVTHLDVKPYPCEQCDKRFSRLDHRNIHMRAHSNIKPYKCDECDKNFTRPEHLRRHRENRHGAASLKPSPPKTEVCEICQKAFTKPKYLQIHMKVHRAVKEWTCKFCQQKFNSKQDHNDHQKVHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHTRVHTGERPYKCPHCDKSFAQGNDLKAHVRRHTGERFKCDICGDGFIQGYHLTQHKRNQHGIDMKSHIRRVEKFITPMAQQQRVLEQQQIAQEQITNPIVPTVAEQLLQPIDHQDTKSNIPKLTIIPEFELRHQEIIAITSPLPQLHNQQQESPQHQILYTSQTQQQIPSTMHILDVNETIVKMEQIDEINQISTIMSYPNYEKGDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -