Tcon039789.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744477.1:143961175-143963366[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00091 0.14 14.0 0.3 1 23 147 169 147 169 0.98 2 14 6.9e-05 0.01 17.5 0.9 2 23 174 195 173 195 0.95 3 14 3.2e-05 0.0048 18.6 1.3 1 23 200 223 200 223 0.96 4 14 2.4e-05 0.0036 19.0 3.8 1 23 229 251 229 251 0.98 5 14 1.1e-05 0.0016 20.1 2.6 1 21 364 384 364 385 0.96 6 14 0.3 44 6.1 0.5 2 23 401 422 400 422 0.94 7 14 4.3e-05 0.0064 18.2 2.0 1 23 428 451 428 451 0.97 8 14 0.014 2.1 10.3 0.6 3 23 463 483 461 483 0.93 9 14 0.0021 0.31 12.9 2.8 1 23 489 511 489 511 0.97 10 14 4.4e-05 0.0066 18.1 0.2 2 23 517 538 516 538 0.97 11 14 2.1e-07 3.2e-05 25.4 0.6 1 23 543 565 543 565 0.99 12 14 0.02 3 9.8 4.8 1 23 571 594 571 594 0.98 13 14 1.5e-05 0.0023 19.6 0.7 2 23 601 623 600 623 0.96 14 14 3.2e-05 0.0048 18.6 1.4 1 23 629 652 629 652 0.96
Sequence Information
- Coding Sequence
- ATGTATTACTTTAATACTTTCCGTGCGAACGATAACGAAGTTCGAGTGGCCGAAATTTATGAACGTCTGACGGGACAtactttaaatgaaaatgatgaaaatttaccaaacaatttatgtttaacatgcctcgaaaaattatttaacgcatgcgaatttttagaattatgtaaaaaatctgaacaacatttggaaatatttaataattgtgttataGAGCCTATAGACAATGATTGTAGTAAAGAAATAATCGAGTGTGGTGATTTGAGTTTCGATTGCAGAAATAGTTTATCTGAGGATTCTGATAGTGAATCGAGtctaacaaataataatgatatcCAGTCATATAGTGATGATGAGGATCCCAACTATGATTCCAATCTATTAAGTAGATCCGTAGATAATGATAACCAAAAATCGAACAGTTCCAACACAAAGTATGAATGCATGAAATGTAATGACGTCTATAGTAGCGCAGCTCAATTAAGGAAACATGAGAAAATTCATACAGGAAATTGGAAATGCTCAGAATGTGATAAGATACTGGCAAATAAGTATTCTTTAAGACATCATATGGTATTGCATACTGGTAAGCCTCATGAATGTATGGTATGTAAAAAAAGGTTTGCAGTCCCTTCGGAACTTACCCGGCATACAAAAATCTaccataaaaatggaaaatcgtATATATGCGATCAATGTCCTAAGCGATATTATACAAAGAGTCATTTGACTAGCCATAAATTAACACATCTCAATAGAAAGGAAGATACAATCCCAGATATTGATGTTGTTTTTGCTTCTAGTAATCATATCACGAAAACTGAAGAGTTGCAGTATGAGGCTAACATGACATCAAGTTTTGCCGTTAAATATGACGCATCAGACGTAACCAGCGACAATAACTATTCATCGGATAGTGAAACTATAAATCATAAAGAATTATCCCAAAACGAACACGAAATTGAGTCTCCAATTCGTAATTTTCCATTTAGTGGAAGCCCTAATGAAGATTATAGCCTGGATAGTCTTCAATCAAATCATGTTGAGAAAGAAAGCTCACTTGAACTTActcaagataataaaatttatagatgtaaaatatgttttaagaaGTTTCGACAAAAAAGTAACTACTTAAGCCATATGAATCTACAACTAAACTGTAAAGATGATTTAAATACTAACAACAACCCACAAAAGTGTGACTTCTGTGCAAACATATCAGACAATGTGTATCAACTACGAAAACATTTAGAAACCCATCTGGATAAAGAGCCATTTAAATGTAAGCTATGcgaaaaaagttataaaacttGGGTAAAATTAAGCGTTCATACAAGACAGACTCATTTGACGAAAACAAAATATCGTAAAAGTCATTTGTGTACACTGTGTGGGCGAGGATTTTTTACAGCCAAACTTTTAGACGAACATTATTTGGCTCATCAAGgaattcgaaaatataaatgtgaCAAATGTAATAGTTCCTTTTGTACCGTTTACGGATTGAAGCAACACGCAACAATTCACACGAGAGATGCACTGCAGTGTAGTGAATGTGGAAAAATATTAGCAAATAAAATGTCTCTCAAAAGTCATATGACCAtacattttggtaaaaaatatcAGTGTACAATTTGTGAGAAATATTTTCCTAATCCAGCCACATTGAATCGGCACATGAAAAGTCATCGAGGGGAAAGGAACTATGTTTGTGATCGATGTTCTAAGCGATATACATGTCGAGGGCATTTGAAcgagcatataaaaaaaattcatgaaaaccCTACAACTTTAAAATGTGAAGAATGCGGAAATGAATTTGCCCACCAAAGAGCACTGAAAAAACACATTCGTCTTGAACAtgccgaaaaaaaaatatttaattgcgaTGTGTGTGGGAAAAGTTATGGTAGGAAATCTAGattaaaagaacacaaaaaaaaagctcataCAATAGCTGTGGTAGAAGATCCCGAACTTACTCCAAACGAAATAGAACAGAATATAGCTACCTATAATCAAACAGAAACCGGAATAATAATGGTTGAAATGTACAAAACTGAtggattataa
- Protein Sequence
- MYYFNTFRANDNEVRVAEIYERLTGHTLNENDENLPNNLCLTCLEKLFNACEFLELCKKSEQHLEIFNNCVIEPIDNDCSKEIIECGDLSFDCRNSLSEDSDSESSLTNNNDIQSYSDDEDPNYDSNLLSRSVDNDNQKSNSSNTKYECMKCNDVYSSAAQLRKHEKIHTGNWKCSECDKILANKYSLRHHMVLHTGKPHECMVCKKRFAVPSELTRHTKIYHKNGKSYICDQCPKRYYTKSHLTSHKLTHLNRKEDTIPDIDVVFASSNHITKTEELQYEANMTSSFAVKYDASDVTSDNNYSSDSETINHKELSQNEHEIESPIRNFPFSGSPNEDYSLDSLQSNHVEKESSLELTQDNKIYRCKICFKKFRQKSNYLSHMNLQLNCKDDLNTNNNPQKCDFCANISDNVYQLRKHLETHLDKEPFKCKLCEKSYKTWVKLSVHTRQTHLTKTKYRKSHLCTLCGRGFFTAKLLDEHYLAHQGIRKYKCDKCNSSFCTVYGLKQHATIHTRDALQCSECGKILANKMSLKSHMTIHFGKKYQCTICEKYFPNPATLNRHMKSHRGERNYVCDRCSKRYTCRGHLNEHIKKIHENPTTLKCEECGNEFAHQRALKKHIRLEHAEKKIFNCDVCGKSYGRKSRLKEHKKKAHTIAVVEDPELTPNEIEQNIATYNQTETGIIMVEMYKTDGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -