Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744476.1:219320662-219322490[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.9e-05 0.0028 19.3 0.4 3 23 217 237 215 237 0.96

2 12 0.0001 0.016 17.0 1.3 1 23 244 266 244 266 0.97

3 12 2.2e-08 3.3e-06 28.5 0.4 1 23 282 304 282 304 0.99

4 12 1.6e-05 0.0023 19.6 0.6 1 23 315 337 315 337 0.99

5 12 5.8e-05 0.0087 17.8 0.9 2 23 344 365 343 365 0.97

6 12 0.084 13 7.8 2.4 1 23 371 393 371 393 0.96

7 12 0.00015 0.023 16.5 5.2 3 23 403 423 401 423 0.96

8 12 3e-05 0.0045 18.7 1.3 1 23 429 451 429 451 0.98

9 12 6.4e-05 0.0096 17.6 1.0 1 23 457 479 457 479 0.98

10 12 1.8e-07 2.6e-05 25.7 2.2 3 23 487 507 485 507 0.98

11 12 9e-06 0.0013 20.3 0.7 1 23 513 535 513 535 0.99

12 12 0.00094 0.14 14.0 1.3 1 23 541 563 541 563 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.9e-05	0.0028	19.3	0.4	3	23	217	237	215	237	0.96
2	12	0.0001	0.016	17.0	1.3	1	23	244	266	244	266	0.97
3	12	2.2e-08	3.3e-06	28.5	0.4	1	23	282	304	282	304	0.99
4	12	1.6e-05	0.0023	19.6	0.6	1	23	315	337	315	337	0.99
5	12	5.8e-05	0.0087	17.8	0.9	2	23	344	365	343	365	0.97
6	12	0.084	13	7.8	2.4	1	23	371	393	371	393	0.96
7	12	0.00015	0.023	16.5	5.2	3	23	403	423	401	423	0.96
8	12	3e-05	0.0045	18.7	1.3	1	23	429	451	429	451	0.98
9	12	6.4e-05	0.0096	17.6	1.0	1	23	457	479	457	479	0.98
10	12	1.8e-07	2.6e-05	25.7	2.2	3	23	487	507	485	507	0.98
11	12	9e-06	0.0013	20.3	0.7	1	23	513	535	513	535	0.99
12	12	0.00094	0.14	14.0	1.3	1	23	541	563	541	563	0.98

Sequence Information

Coding Sequence: atGATGTATGATGAAAATCTAGAATATAATAATTCGTGTCGTGTGTGCTTAGAAGAAACGGTCGAGCTGCATTCAATTTATGATAATCTCGATGAATGCCATAAAATTTCTGATGTTATACTGCTTCTGGCACCGGTAATGATTTGTGTTGATGATGGACTTCCAAACCGAATATGTGAAAATTGTACGgaatatcttaaaatttattataatttgcgAGCGATTTGTATTCGTTCCGACCAATTACTTAGGACACGAGATAAATCTGATATTGTggtaaaaattgaagatttcgACGATGAATACACAGTTAtagaaaaaacagaaataatGGATATATCTGATAGCCAGTTATCAAAAAAAGAAACGTTCGACGAAGAGCATTTATATACCGAAATAGAGGAAGAGTGTGCGACCGCCGACGATAATGAAGACGATcttgaaatgtttgaaataaCAGTAGATTCGGAACCCGAATcagaaaatgatataaaacccaaattttgcaatgaGGAACTAATCGAAATAGAGATTAATAAGCAAAGTGCTGGTGAAAGTGAAGATGACTATAAATCAGAACATTTAGAAAGTGATGACCATTTTCCGGATCCATTGACCGGGAAACGGGTTACTAAAACAGGACTTGCATGTACCGAATGTGGTAAAGTTTATAATAAAGCTTACCGACTTAAAAAGCACATGGAAAATCACGATATGGAAGGAAAACCATTTAAATGTGATGTTTGCTTTATATGTTTCTCACTCGAAAGTGCTCTAATTCGTCATATGACCCTACACTCGGAAGCAATGATAGCATCGACCGCACTATATGAAGAAGAAGCATATAAATGTGAAGAATGTCCAAAAGTATTTGAGCGTAAATCGTCGCTAGCATCACACATGAAAGTGCACAAGAAAAGTTCTTCGGCAGAAGAGACTGAATTTAAATGTGATTTATGCCCTAAAGTATTTGAAGCACGCAAAATGTTAATGCGCCACTGGAAAACCCATCCCGAGATGAAAAAACTTAAATGCAGTATGTGCGACAAAACTTTCTCATGGAAAACTCAACTTATCGATCATATCAACAAACATAATGGGGTCACACCGTACGAATGTATcgaatgtaaattaaaatttcattcatccGCTATGTATCGTAAACATCTGGCAAAGCATAAACCGAAAGATAAAATGGATTGTTTGTGTCCGCATTGCGGTCGCGTTTTTCATAATAATACGGATCTGAAGCAACATCTTACGATACATTCGACTGAAAAACCATATGCTTGTGAAGAATGTCCGAGTCGTTTTGTATCAAAGAAATATCTTACAAAACATCGACAAACTCATTCGGGTGTAAAGCCGCATGTCTGTGATGTATGCGGCAATGCATTTACAAAAGGAAGCTCGCTGGTCAAACACAAACGAACACACACCGGTGAAAAACCATTTGGATGTCCAACGTGCGATAAACGGTTCAATTCATCCGACCATTTGAAACGACACATTCGAATTCATACTGGTGAAAAACCATACAAATGTCAATTCTGTGAACGTGCTTTTGCGCAAAGTAGCGATTTAATCGGGCATACACGAAAACATTTAGgcgataatatatataaatgtgaaaaatgttCGTCAACATTTCGGCTGCAAGGTGAGCTACGTGAGCACAATCGTTTGCATTTCCTAGccgaaaaagaaacaaaagttTCGAAAATTAGTGAATCACAGGAAGACGCCGACATTCCAAGCcttgaataa
Protein Sequence: MMYDENLEYNNSCRVCLEETVELHSIYDNLDECHKISDVILLLAPVMICVDDGLPNRICENCTEYLKIYYNLRAICIRSDQLLRTRDKSDIVVKIEDFDDEYTVIEKTEIMDISDSQLSKKETFDEEHLYTEIEEECATADDNEDDLEMFEITVDSEPESENDIKPKFCNEELIEIEINKQSAGESEDDYKSEHLESDDHFPDPLTGKRVTKTGLACTECGKVYNKAYRLKKHMENHDMEGKPFKCDVCFICFSLESALIRHMTLHSEAMIASTALYEEEAYKCEECPKVFERKSSLASHMKVHKKSSSAEETEFKCDLCPKVFEARKMLMRHWKTHPEMKKLKCSMCDKTFSWKTQLIDHINKHNGVTPYECIECKLKFHSSAMYRKHLAKHKPKDKMDCLCPHCGRVFHNNTDLKQHLTIHSTEKPYACEECPSRFVSKKYLTKHRQTHSGVKPHVCDVCGNAFTKGSSLVKHKRTHTGEKPFGCPTCDKRFNSSDHLKRHIRIHTGEKPYKCQFCERAFAQSSDLIGHTRKHLGDNIYKCEKCSSTFRLQGELREHNRLHFLAEKETKVSKISESQEDADIPSLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01460493; iTF_01460488; iTF_01457752; iTF_01458845; iTF_01456672;
90% Identity: -
80% Identity: -