Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744476.1:225017651-225019469[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0013 0.19 13.6 0.3 1 23 156 179 156 179 0.97

2 14 6.2e-05 0.0093 17.7 0.8 1 23 187 209 187 209 0.96

3 14 0.0088 1.3 10.9 4.5 1 23 215 238 215 238 0.95

4 14 0.012 1.7 10.5 5.0 1 23 243 265 243 265 0.97

5 14 0.0035 0.53 12.2 7.8 1 23 271 293 271 293 0.97

6 14 7.4e-07 0.00011 23.7 2.7 1 23 299 321 299 321 0.96

7 14 8.3e-05 0.012 17.3 0.6 1 23 327 349 327 349 0.98

8 14 1.1e-07 1.7e-05 26.3 1.2 1 23 355 377 355 377 0.99

9 14 2.1e-05 0.0031 19.2 2.6 1 23 383 406 383 406 0.92

10 14 1.3e-05 0.0019 19.9 2.1 2 23 442 463 441 463 0.97

11 14 3.1e-06 0.00046 21.8 1.4 1 23 469 492 469 492 0.95

12 14 5.3e-07 7.9e-05 24.2 0.5 1 23 498 520 498 520 0.98

13 14 1.5e-05 0.0023 19.6 4.9 1 23 526 548 526 548 0.97

14 14 0.014 2 10.3 0.5 1 23 554 576 554 576 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0013	0.19	13.6	0.3	1	23	156	179	156	179	0.97
2	14	6.2e-05	0.0093	17.7	0.8	1	23	187	209	187	209	0.96
3	14	0.0088	1.3	10.9	4.5	1	23	215	238	215	238	0.95
4	14	0.012	1.7	10.5	5.0	1	23	243	265	243	265	0.97
5	14	0.0035	0.53	12.2	7.8	1	23	271	293	271	293	0.97
6	14	7.4e-07	0.00011	23.7	2.7	1	23	299	321	299	321	0.96
7	14	8.3e-05	0.012	17.3	0.6	1	23	327	349	327	349	0.98
8	14	1.1e-07	1.7e-05	26.3	1.2	1	23	355	377	355	377	0.99
9	14	2.1e-05	0.0031	19.2	2.6	1	23	383	406	383	406	0.92
10	14	1.3e-05	0.0019	19.9	2.1	2	23	442	463	441	463	0.97
11	14	3.1e-06	0.00046	21.8	1.4	1	23	469	492	469	492	0.95
12	14	5.3e-07	7.9e-05	24.2	0.5	1	23	498	520	498	520	0.98
13	14	1.5e-05	0.0023	19.6	4.9	1	23	526	548	526	548	0.97
14	14	0.014	2	10.3	0.5	1	23	554	576	554	576	0.98

Sequence Information

Coding Sequence: atGGAAACATCTTTTGATGTTCCTGGCGCACTATCAATATTGAACCTAAAGataTATAAAGACGATGGCTTACCACAGTTAATATGTAATGAATGTGTTGATTGTTTAaagtatttacataaatttcggAGATTATGCGAAGAATCACAAATTACACTAGGACGGTTCCATACAgctgataaaataaattggagTGCAATTAAAACAGAAACTGATATAGAATTTACTGAAGTTGAATTTTTACATGTCGGACAGGCTGATTTTCCAacagattttattttggaaaaccagttaaaagaagaaattcttTGGGATGACGGTCGTCTTACTTGTTCGAGTGTTGAAATGAATCAAAATGATTTGGGTGATTCTGGAGTACACCAagaaaatttgccaaatttaacATCAATAGAGTCAAATAAAAATGCGTTGGAATATCTAGAAATTAATGGCGGTGAGAGTAGATTTAAGTGTCGTTTGTGTgacaaaattttcgaaacaaTCGAATTATTTGATTCGCATATGGAATCTGTTCATCCAATTAAGAAGAGTCGTACTCACATGTGTCTAATTTGTGGGAAAGGCTTTGTTACGATACATAGTCTTAATATACACATCGAGTCGCACAATCAAAATAATGATTATAAATGCGATATTTGCGGAAAAGAATTTAAATGTAAACTTTATATGAGGAAACATAAAAGGGCGCAGCATACCATCGAAAATCACGAATGCCCACATTGTaatgtaaaatttgataatactGTTAAGTATAAGTATCATTTAAAATCACACGATCCGGATAAGAAATATAAATGCAAATACTGTGATAAATCGTTTTTACAGCACCATCATCTTACAGATCATGAGAGTATTCATACAGGATTACGTCcgtatttatgtaatatttgtgGCAAAAACTACCGGACaccacataattttaaaattcatcttCGCACACACAATAGCGATCGGCCATATGTGTGTTCGCTTTGTGGCAAAGACTTTGCGCAGCGTGGATCATATTTATTGCATAAAAGACAGCACGCTGGAATACGTCCATATCAATGTGAACAATGTGgtaaaaatttctttcaaaaatcTTCGTTAAATGTACATTTGCGAATCCATACCGGAGAACGTCCTTATAAATGTGACATGTGCAATAAATGTTTTTCGCAATCACCCCAGTTAAAGTATCATAAAATAGCAATCCATAATGGATTACCTTTGGGTCGTAAGAAACACGTTGTGGATGGTGTTGAACAAAGTTTCGAAGAATCAACTGAGTCACAAAAAAAAGATATCAAAAATGTACTGctaaaatgcaatttttgtactaaacgatttaaattGCAATCATCTTTGGCATCCCATATGAAAATTCATTCCGAAGAACGTAATCACGTGTGCACAGAATGTGGTAATTCTTTTAAACGTGCTGAACATCTAAAAGTTCACATTAAAGGTGTTCATCTCAAACAAAAGCCGCACACGTGTGAAATTTGTCCTAAAGCATTTTTTCAATCGggtgatttaaatattcatatgaTGACACATACAGGTGAAAAACCACACTCGTGTCCACATTGTTCGAAACGATTTCGattacaaaaatcattaaaaattcatattagaATTCACACGGGagaaaaaccttacaaatgtgaCATTTGTTTATCCCGGTTCATATCTTATAACGCGTTAATAATACACACAACAAAACATCCCGAATTACTTTTACAGTCACCTAAAGATAATTATTAG
Protein Sequence: METSFDVPGALSILNLKIYKDDGLPQLICNECVDCLKYLHKFRRLCEESQITLGRFHTADKINWSAIKTETDIEFTEVEFLHVGQADFPTDFILENQLKEEILWDDGRLTCSSVEMNQNDLGDSGVHQENLPNLTSIESNKNALEYLEINGGESRFKCRLCDKIFETIELFDSHMESVHPIKKSRTHMCLICGKGFVTIHSLNIHIESHNQNNDYKCDICGKEFKCKLYMRKHKRAQHTIENHECPHCNVKFDNTVKYKYHLKSHDPDKKYKCKYCDKSFLQHHHLTDHESIHTGLRPYLCNICGKNYRTPHNFKIHLRTHNSDRPYVCSLCGKDFAQRGSYLLHKRQHAGIRPYQCEQCGKNFFQKSSLNVHLRIHTGERPYKCDMCNKCFSQSPQLKYHKIAIHNGLPLGRKKHVVDGVEQSFEESTESQKKDIKNVLLKCNFCTKRFKLQSSLASHMKIHSEERNHVCTECGNSFKRAEHLKVHIKGVHLKQKPHTCEICPKAFFQSGDLNIHMMTHTGEKPHSCPHCSKRFRLQKSLKIHIRIHTGEKPYKCDICLSRFISYNALIIHTTKHPELLLQSPKDNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -