Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744477.1:165876044-165878109[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.6e-06 0.00024 22.7 4.6 1 23 265 287 265 287 0.97

2 12 1.4e-07 2.1e-05 26.0 0.3 1 23 293 315 293 315 0.99

3 12 0.00074 0.11 14.3 1.4 1 23 321 343 321 343 0.97

4 12 1.1e-06 0.00017 23.2 0.6 1 23 349 372 349 372 0.96

5 12 4e-05 0.006 18.3 0.4 2 23 381 402 380 402 0.97

6 12 3e-06 0.00045 21.8 0.6 1 23 411 433 411 433 0.98

7 12 9.1e-07 0.00014 23.5 1.3 1 23 439 461 439 461 0.98

8 12 3.8e-06 0.00056 21.5 1.4 1 23 467 489 467 489 0.99

9 12 3.8e-05 0.0057 18.4 4.4 1 23 497 519 497 519 0.98

10 12 0.00032 0.047 15.5 1.0 1 23 527 550 527 550 0.95

11 12 0.0019 0.28 13.0 0.1 1 23 554 577 554 577 0.92

12 12 0.0025 0.38 12.6 1.7 3 23 584 604 582 604 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.6e-06	0.00024	22.7	4.6	1	23	265	287	265	287	0.97
2	12	1.4e-07	2.1e-05	26.0	0.3	1	23	293	315	293	315	0.99
3	12	0.00074	0.11	14.3	1.4	1	23	321	343	321	343	0.97
4	12	1.1e-06	0.00017	23.2	0.6	1	23	349	372	349	372	0.96
5	12	4e-05	0.006	18.3	0.4	2	23	381	402	380	402	0.97
6	12	3e-06	0.00045	21.8	0.6	1	23	411	433	411	433	0.98
7	12	9.1e-07	0.00014	23.5	1.3	1	23	439	461	439	461	0.98
8	12	3.8e-06	0.00056	21.5	1.4	1	23	467	489	467	489	0.99
9	12	3.8e-05	0.0057	18.4	4.4	1	23	497	519	497	519	0.98
10	12	0.00032	0.047	15.5	1.0	1	23	527	550	527	550	0.95
11	12	0.0019	0.28	13.0	0.1	1	23	554	577	554	577	0.92
12	12	0.0025	0.38	12.6	1.7	3	23	584	604	582	604	0.96

Sequence Information

Coding Sequence: ATGAGCATAAAAATAGATATAAACGTATGCCGAGTATGTATGAAAACAGGAGATGGTATATCGATCTATTCGAATAGTGAAACACCAAAAAAATTCCAGTTTTGTACACAATTAGagATTTCAGAAAATGATGATTTACCTAAAACGTTATGTAATAAATGTGTTGGACGTTTAAAAATTTCGTATGATTTTCGTAAACAAGCCGATACGACAGATAAACATTTGAGGCAGGTTATAACACATTTCACAGAACAATTAAATCAATCCGTTCAGATAAAACAGTGTGTAGATGATGAAGTGGATACGGAAATTGATGATATGCTGGTTGAATCACACGATTACACAGAGCAAGATCGTGTGCTGTCATCGGCCAAAATTGAAGTTGATCAAAACGACGAAATAGAACAATTGAGCTCAGATCACGAGAATCAGCAAGATCTAGGAACGGAAGATATtcctataataaatatttcgcaTGGTGAGAATGCAATTACCATTGAATCAGACGGTGTTGTATACGAGGAAATTGAACGTGAAGGTGAAGAAGTTCCTGTATATATTGAAGTTGAGGAATGTGGTGATATCACGAGTGAAGCACACCTCGAAGAAGTCGAAGAGATTGAAGAAGGTGATATGGAAATGGAAGATTCTAAACCAGttaatttattcacaataaCAGAAGTTAATTATATAACAGAAAATGAGGGTGAAGGTGAACAAACCGATCCTGGGACTGGAAATGAAAGTGATtcgaaaaaatcaatcaataatctaTTGTTTTCAGGTAAAACTCATAATTGCAATAAATGCAATAAAGATTTTAGTACCAAAACCAATCTGATACGCCATTTGCAAACCCATGACGGTGTTAAACCATACGAGTGTAATATATGTGGAGCCCGTTTTACACAAAACGGTTCACTAAAACAGCATTTACGAATTCATTCGGGTGAACGACCATACAAATGTAAAGTGTGTGGTCGTGGCTTCACTCAAGGCAAATCACTTTCGTTCCATGTGAGGCGGCATACGGGTGAGAAACCTTATACTTGTGAAACTTGTGGTTTATCTTTTCGACAAAAAGATGGATTGAAGCGGCACGTTTTGATTAAACATAGCGATATAGAGGTCGAAGGACTACCGTGTCCGACATGCGGCAAAGTACTATTTTCCAAGTACACATTATTAATGCACATGAAAAAGCATATTGGCTCGCAGCCAGAAGACACACATAAATGTGAAGAGTGCGAACGAGCATTCTCATCGAAGGCGTCTCTAATAAATCACGTTCGATGGCACACCGGCGAAAAGCCATTTAAATGTGAAACGTGTGGTAAAAACTTTTCCCAAAAAGGTTCTCTAGTGTCCCACTTGAAACAGCATTTGGATGTGAAGCCGTATAAGTGTGAAACTTGCGGCAAAGGATTCAcccaaaaacatcaaattgtAGCACATTTGAATATGcatcaaaatcaaaacttaaaaaaatttaaatgtcagaAGTGCCATAAAAGTTTTGCCATTAAGCGAAACCTTATCCAGCATCTAAAAAATCATGAGCGCGATGATTGCGAAGAATTTAAATGTGACGACTGTAACATAGGATTTAATTCGAGACGTGGTCTTAAGCTGCATCGTAGTAATCAACATAAAGACGATCACATCTGTGATGTGTGTAACATACAATTTGACATGGCTTCTGATTTAAATCAACATATCGATTTGGAACATGACGAAATCGATATGAATTGTGAGATTTGTGAACAACAGTTCTTTTCGCACAAGCTCCTAACAAACCATATGCTGGAGCATGAGCTTAGCGAAATTCCATag
Protein Sequence: MSIKIDINVCRVCMKTGDGISIYSNSETPKKFQFCTQLEISENDDLPKTLCNKCVGRLKISYDFRKQADTTDKHLRQVITHFTEQLNQSVQIKQCVDDEVDTEIDDMLVESHDYTEQDRVLSSAKIEVDQNDEIEQLSSDHENQQDLGTEDIPIINISHGENAITIESDGVVYEEIEREGEEVPVYIEVEECGDITSEAHLEEVEEIEEGDMEMEDSKPVNLFTITEVNYITENEGEGEQTDPGTGNESDSKKSINNLLFSGKTHNCNKCNKDFSTKTNLIRHLQTHDGVKPYECNICGARFTQNGSLKQHLRIHSGERPYKCKVCGRGFTQGKSLSFHVRRHTGEKPYTCETCGLSFRQKDGLKRHVLIKHSDIEVEGLPCPTCGKVLFSKYTLLMHMKKHIGSQPEDTHKCEECERAFSSKASLINHVRWHTGEKPFKCETCGKNFSQKGSLVSHLKQHLDVKPYKCETCGKGFTQKHQIVAHLNMHQNQNLKKFKCQKCHKSFAIKRNLIQHLKNHERDDCEEFKCDDCNIGFNSRRGLKLHRSNQHKDDHICDVCNIQFDMASDLNQHIDLEHDEIDMNCEICEQQFFSHKLLTNHMLEHELSEIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01052494;
90% Identity: -
80% Identity: -