Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744476.1:225027534-225029396[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0017 0.25 13.2 0.9 1 23 141 163 141 163 0.97

2 14 0.00061 0.091 14.6 1.7 1 23 170 192 170 192 0.98

3 14 0.0016 0.24 13.2 1.9 1 23 235 257 235 257 0.96

4 14 0.00038 0.057 15.2 1.2 1 23 264 286 264 286 0.98

5 14 1.6e-05 0.0023 19.6 0.7 1 23 304 326 304 326 0.99

6 14 1.5e-05 0.0023 19.6 1.0 1 23 335 357 335 357 0.98

7 14 6.6e-06 0.00098 20.8 0.7 1 23 363 385 363 385 0.98

8 14 7.6e-05 0.011 17.4 2.9 1 23 391 413 391 413 0.98

9 14 9.2e-07 0.00014 23.4 1.2 3 23 421 441 419 441 0.95

10 14 0.00014 0.021 16.6 0.7 1 23 447 469 447 469 0.97

11 14 8.7e-05 0.013 17.2 2.3 1 23 475 497 475 497 0.98

12 14 0.00043 0.064 15.0 1.6 3 23 505 525 503 525 0.96

13 14 1.6e-07 2.3e-05 25.9 0.9 1 23 531 553 531 553 0.99

14 14 2.1e-05 0.0032 19.2 1.0 1 23 559 581 559 581 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0017	0.25	13.2	0.9	1	23	141	163	141	163	0.97
2	14	0.00061	0.091	14.6	1.7	1	23	170	192	170	192	0.98
3	14	0.0016	0.24	13.2	1.9	1	23	235	257	235	257	0.96
4	14	0.00038	0.057	15.2	1.2	1	23	264	286	264	286	0.98
5	14	1.6e-05	0.0023	19.6	0.7	1	23	304	326	304	326	0.99
6	14	1.5e-05	0.0023	19.6	1.0	1	23	335	357	335	357	0.98
7	14	6.6e-06	0.00098	20.8	0.7	1	23	363	385	363	385	0.98
8	14	7.6e-05	0.011	17.4	2.9	1	23	391	413	391	413	0.98
9	14	9.2e-07	0.00014	23.4	1.2	3	23	421	441	419	441	0.95
10	14	0.00014	0.021	16.6	0.7	1	23	447	469	447	469	0.97
11	14	8.7e-05	0.013	17.2	2.3	1	23	475	497	475	497	0.98
12	14	0.00043	0.064	15.0	1.6	3	23	505	525	503	525	0.96
13	14	1.6e-07	2.3e-05	25.9	0.9	1	23	531	553	531	553	0.99
14	14	2.1e-05	0.0032	19.2	1.0	1	23	559	581	559	581	0.99

Sequence Information

Coding Sequence: atggaaaatattgaagagaatACTTGCCGAATTTGTTTGGCAGCGACCGAACTTAATGAAAGCCATggaatttttgatatattctcCAATGAGCTAACATACTCTGATATCGTTATATTGATTACAtcaatagaaataaaaccaaatgatggtctaccaacaaaattatgtaaaaattgttctaatcGGGCGCGTGATGCATACAATTTTCGTAAACAATGCATAAACTCagatgaaatcctaaaatctaaAACTGAAACGCCGAACATTGTAAAAGTGGAAGTGACAGAGGGTGATGTAAAAACTGAATGTTCTGACGACGATACTGTTGAAGACAGTATGAATGAGACAGATTGCAATCCACTTGACGAAACAGACGACATAGTTGAAACACCATCccgacaaaaagaaaaaaagcaaCATACCtgtgaaatatgttttaaagtATTTGACAAACCATTCATCCTACAACGGCATTTAATCGTCCATAAGGCCAATGGTAAAGAATTTGAATGTAATGTATGTCATCGATTTTATGCTTTTGAAGGTTCTCTTATCAATCATAAAATGACACACGATGTCGATCCATCTGATAAATCCGTTAATAATCAGCCCCACGATGATGGCATTAatgatgtaaaatatatacCACCGTTGGAAGAGGGACCTATACCTGAAAAACCACGACAAATTCGAAAAActcataaatgtaaaatatgttcaaaattgtttgataaaCCATCGCGACTTTTACGACATGCAACTGTACATGCCGCAAACGGAAAAGAATTTGAGTGTAATATATGCCATCGATTCTTTGCGGCTGGAAGTACTTTAATTCGACATAAAATTACTCATGCTGCTCAAGCAGAAAATATGAATCGAACTTCCTCCAGTCCGAAAAAACCGTTTAAATGTTTCGAATGTGATCGAATATTTGAGAAACAAGAGTCGATGGCATCCCATATGAggatacacaaaataaattcgaCAGTCAAAGAGTATAAATGTGATTACTGTCCAAAAGTATTTaccgaaataaatttattgacgAGGCATTccaaatcacatgtcgaaatgaaAGTATTTAAATGTGAATTATGTCCCGAGAGCTTTGGATCAAGGTCACAATTGACTGATCATACAAACAAGCATACTGGTTTGAAACCTTACGAATGCAcgatatgcaaaaaaaaatttcattcatcaACCGTACTAAATCAACATATAAAAATTCACACCGATGACAAATCTCATCTGTGTCCACAATGTGGTAAAGGATTTAAAAACaatggatatttaaaacaaCACATGATCTCACATTTGGGCGAAAAGATATTTGCTTGTCCGCAATGTCCAAGTAAATACTCGACGAAaggaaaattaaaatctcatCTTCAAAGTCATTCCGGACTGAAACCGTTTGTGTGTGAATTATGCGGTTCCAGTTTTACAAAACATTACACATTGACGGTTCATAAAAGAATTCATTCGGGCGAAAAACCATTCGGATGCGATGCATGCCCAAAACGTTTTATCTCGCTAAATCATTTGAAGCGGCATTCTCGTGTCCATACTGGCgttaaaccttacaaatgtaaatattgtgAACGTGCGTTTGCCCAAAGTGGTGACTTAATAAAACACACCCGAACCCATATCGGAACAAATACATACAAGTGTGATAAATGCGAAGTAACATTTCGACTATATGGTGAACttaaaaaacatattcaaatgcattttttggctgaaaaagaaatgttggatgaaaaaacaaaaagtgaaaattaa
Protein Sequence: MENIEENTCRICLAATELNESHGIFDIFSNELTYSDIVILITSIEIKPNDGLPTKLCKNCSNRARDAYNFRKQCINSDEILKSKTETPNIVKVEVTEGDVKTECSDDDTVEDSMNETDCNPLDETDDIVETPSRQKEKKQHTCEICFKVFDKPFILQRHLIVHKANGKEFECNVCHRFYAFEGSLINHKMTHDVDPSDKSVNNQPHDDGINDVKYIPPLEEGPIPEKPRQIRKTHKCKICSKLFDKPSRLLRHATVHAANGKEFECNICHRFFAAGSTLIRHKITHAAQAENMNRTSSSPKKPFKCFECDRIFEKQESMASHMRIHKINSTVKEYKCDYCPKVFTEINLLTRHSKSHVEMKVFKCELCPESFGSRSQLTDHTNKHTGLKPYECTICKKKFHSSTVLNQHIKIHTDDKSHLCPQCGKGFKNNGYLKQHMISHLGEKIFACPQCPSKYSTKGKLKSHLQSHSGLKPFVCELCGSSFTKHYTLTVHKRIHSGEKPFGCDACPKRFISLNHLKRHSRVHTGVKPYKCKYCERAFAQSGDLIKHTRTHIGTNTYKCDKCEVTFRLYGELKKHIQMHFLAEKEMLDEKTKSEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01052488;
90% Identity: -
80% Identity: -