Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744476.1:219318716-219320557[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00036 0.054 15.3 0.2 1 23 116 138 116 138 0.98

2 14 6.9e-05 0.01 17.5 1.3 1 23 176 198 176 198 0.98

3 14 0.0023 0.34 12.8 3.3 1 23 206 228 206 228 0.98

4 14 3.8e-05 0.0057 18.4 1.8 1 23 237 260 237 260 0.98

5 14 5.6e-06 0.00083 21.0 0.8 1 23 298 320 298 320 0.99

6 14 0.19 29 6.7 3.0 1 21 329 349 329 351 0.93

7 14 6e-05 0.009 17.7 0.2 1 23 357 379 357 379 0.98

8 14 7.9e-06 0.0012 20.5 2.3 1 23 385 407 385 407 0.98

9 14 1.4e-06 0.00021 22.9 1.5 3 23 420 440 419 440 0.99

10 14 8.5e-05 0.013 17.3 1.5 1 23 446 468 446 468 0.97

11 14 1.1e-05 0.0016 20.1 0.8 1 23 474 496 474 496 0.97

12 14 2.9e-07 4.4e-05 25.0 0.6 1 23 502 524 502 524 0.97

13 14 1.4e-06 0.0002 22.9 1.4 1 23 530 552 530 552 0.99

14 14 0.00096 0.14 13.9 0.9 1 23 558 580 558 580 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00036	0.054	15.3	0.2	1	23	116	138	116	138	0.98
2	14	6.9e-05	0.01	17.5	1.3	1	23	176	198	176	198	0.98
3	14	0.0023	0.34	12.8	3.3	1	23	206	228	206	228	0.98
4	14	3.8e-05	0.0057	18.4	1.8	1	23	237	260	237	260	0.98
5	14	5.6e-06	0.00083	21.0	0.8	1	23	298	320	298	320	0.99
6	14	0.19	29	6.7	3.0	1	21	329	349	329	351	0.93
7	14	6e-05	0.009	17.7	0.2	1	23	357	379	357	379	0.98
8	14	7.9e-06	0.0012	20.5	2.3	1	23	385	407	385	407	0.98
9	14	1.4e-06	0.00021	22.9	1.5	3	23	420	440	419	440	0.99
10	14	8.5e-05	0.013	17.3	1.5	1	23	446	468	446	468	0.97
11	14	1.1e-05	0.0016	20.1	0.8	1	23	474	496	474	496	0.97
12	14	2.9e-07	4.4e-05	25.0	0.6	1	23	502	524	502	524	0.97
13	14	1.4e-06	0.0002	22.9	1.4	1	23	530	552	530	552	0.99
14	14	0.00096	0.14	13.9	0.9	1	23	558	580	558	580	0.99

Sequence Information

Coding Sequence: ATGAATATTATAGAAGACGAgccaaatattcaaaatatatgccGCTTGTGTTTAAAATCGAATGAATTGTACCACTCAGTTTTCGACAATTTAGAAGCAAATCTAAAGTATTCGGACGttattgtcctatttgccccgATTGAAATCCATGCGAATGACGGCTTGCCTGacaaaatatgcaataattGTTCAAATAGTTTAAATTCTATACACAATTTACGTGATGTTTGTGTTAAATCTGATTCATGGTTACGAGAGAAAATCAACGATAAAATTAAGCAAGAGGCTATTATAGTCCCACCATTAAAAAAGTATGACTCAAGCTTCATACCAGATCATATCCAATATAAATGTGAACAATGTAACGATGTATTTACGATACAAGAAGATCTTGAagtgcatataaaatatcacAGTAACGAATCTCAATTTAGTAACGAAGAGTCTCATCACAATGATGGTGAAAACATTGATAGCGATGATGTGCCCCTGATTCAATCGAAAAGAAATGgcaaacgaaaaaattatacttGTGCTATATGCAATAAAACATTTCCTAGTCGGCATGCAATAACGCGGCATTCGAATGTACATAACAATGCCAAAggtaaaaagtttaaatgtgaAGTATGCCATATTTACTTATCGACTCGGCGAACGCTACTACGACATCGAAAGATTCATTTAAAACCTGAATCGGACAAGCAATATACGTGCACACAGTGTGAtggtaaaacatttaaaaatcaaaaatcatacGCCTCGCATATGCGGATACACAAAATTTACTATGAGACCAAAGAAAATGGCACGGAAAGTGAGCAGGACGATGTTCAAAGTAGCGAAGAAGAAATGGACAAACCACCCAAAACGACACAATTAAAACGTGCATTTAAATGCAAAGATTGTTTCCGAGTGTTTTCAAAGCAACCGTCTCTTGCCTCACATGTCCGGGTACACAAAGAAAATATCACAAAGAAGGAGTATATCTGCGATATATGCAATCAAAAATTCATTGCCCATATATTTTTAACACGGCACTGGAAGTGTCACCccgagaaaaaaattcataaatgtgATGTATGCGATGAGGCCTTTGTATTAAGCGATCAACTAGCCGATCATCTTAATAAACATAATGGCATTCGGCCATATGAATGTGAAACGTGTGACAAAAAGTTCTATTCATACGAAACTTTGCGGAAACATCGTAATGTTCATAAACCAAACCATAAAAAGGATAAAATCGAACGACTGTGTCCGCATTGTGGAAAAGTGTTTAGCAACAATACTGTACTGCGGCAACATTTGAACACACATTCGGATACCAAGCCCTTTGCATGTGATCAGTGTCCTAGTCGATTTGTATCAAAACGATATTTAAAGAAACACGTTAAAACGCACGCGGGTCTTAAACCGCACGTCTGTGACGAATGTGGTAATgcatttgccaaaaaatcatctttagttAAACACAAACGTATACATACCGGGGAAAAACCGTATGCGTGTGCAAGTTGTGACAAACGATTTAACTCAtcggaaaatttaaaacgaCATATACGAATTCATACGGGAGAAAAGCCttacaaatgtaaattttgtgatCGTGCTTTTGCACAAAGTAGTGAGCTAACTGGACACACGCGTAAACATTTAGGGGACAACATATATCAATGTGAAAAATGTCCGGATGCCTTTCGGTTGCATGGTGAACTGAGAGACCATACCCGAATGCATTTTTTAGCAGAAAAACAAACGatcgaaacaatttaa
Protein Sequence: MNIIEDEPNIQNICRLCLKSNELYHSVFDNLEANLKYSDVIVLFAPIEIHANDGLPDKICNNCSNSLNSIHNLRDVCVKSDSWLREKINDKIKQEAIIVPPLKKYDSSFIPDHIQYKCEQCNDVFTIQEDLEVHIKYHSNESQFSNEESHHNDGENIDSDDVPLIQSKRNGKRKNYTCAICNKTFPSRHAITRHSNVHNNAKGKKFKCEVCHIYLSTRRTLLRHRKIHLKPESDKQYTCTQCDGKTFKNQKSYASHMRIHKIYYETKENGTESEQDDVQSSEEEMDKPPKTTQLKRAFKCKDCFRVFSKQPSLASHVRVHKENITKKEYICDICNQKFIAHIFLTRHWKCHPEKKIHKCDVCDEAFVLSDQLADHLNKHNGIRPYECETCDKKFYSYETLRKHRNVHKPNHKKDKIERLCPHCGKVFSNNTVLRQHLNTHSDTKPFACDQCPSRFVSKRYLKKHVKTHAGLKPHVCDECGNAFAKKSSLVKHKRIHTGEKPYACASCDKRFNSSENLKRHIRIHTGEKPYKCKFCDRAFAQSSELTGHTRKHLGDNIYQCEKCPDAFRLHGELRDHTRMHFLAEKQTIETI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -