Tcon007407.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- ZFY
- Assembly
- GCA_963556175.1
- Location
- OY744475.1:89041705-89044325[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00049 0.074 14.9 5.9 1 23 105 127 105 127 0.99 2 19 0.00063 0.093 14.5 2.4 1 23 133 155 133 155 0.94 3 19 0.00061 0.091 14.6 3.4 3 23 167 187 166 187 0.97 4 19 9.1 1.4e+03 1.4 0.3 1 10 193 202 193 217 0.89 5 19 6.7e-08 1e-05 27.0 0.8 3 23 241 261 240 261 0.98 6 19 6.6e-06 0.00098 20.8 2.8 1 23 267 289 267 289 0.98 7 19 7.8e-05 0.012 17.4 1.9 1 23 295 318 295 318 0.97 8 19 0.00077 0.12 14.2 1.9 1 23 330 353 330 353 0.94 9 19 1.1e-06 0.00017 23.2 0.3 2 23 435 456 434 456 0.96 10 19 0.00055 0.083 14.7 3.1 1 23 462 484 462 484 0.98 11 19 0.0027 0.4 12.5 0.2 1 21 491 511 491 514 0.89 12 19 0.068 10 8.1 1.5 2 23 522 543 521 543 0.91 13 19 0.0013 0.2 13.5 2.7 2 23 579 600 578 600 0.97 14 19 0.0021 0.32 12.9 0.8 1 23 606 628 606 628 0.99 15 19 3.8e-05 0.0057 18.3 2.7 1 23 634 656 634 656 0.98 16 19 6.2e-05 0.0092 17.7 1.3 2 23 686 707 686 707 0.97 17 19 0.0011 0.16 13.8 4.0 1 23 713 735 713 735 0.98 18 19 0.00042 0.062 15.1 5.2 1 23 742 764 742 764 0.98 19 19 0.0007 0.1 14.4 3.6 1 23 770 792 770 792 0.96
Sequence Information
- Coding Sequence
- ATGTTAACTCCTATTGATCAAGAgaatatatgttatataatttcatcTGGATCGCTTGTGCCAATTTCGAATGACAATAATATTATAAACCCAGAAGAATTCTGTTTAGTAGCGTCCGAAGAACTTGTCTATAACAATGATCAACAAATAATGCCTCTTCACGAAGGGGAGCCAAGTACTTCCGGTTTACAAATTCCGATCGATGAAAGTCGTACTGAAACATTATTAGACTACAAACCTGTTGAAATGTATGAGTCTGCAATCGATGGAACGACAAATTGGGacattaaacaagaaaaaatactGAATTCTTATAAATGTGAACATTGTACTGCTCAATTTGTTCACttgaaacttttgaatcggCACAAGCGAACTCATTTGTacgaaaaaccatttaaatgcGAACAATGCcatgaaagttttaattttgcgGTCAATTTAAAAGTACACAGTACAAATCACCAGGATACATTAAATGGAACCACAAAAAATATGTGTTGCATTTGTAATAGAATTTTCCGTAGGTTTTCGAGTCTACGCGGGCATATCAATAGGCATAAAGTGTCGGAATACTTTAATTGTGAACAGTGTGACGaaatatttttagcaaaactattttatgaTTTGCATTTAGAAAATCATCATAAAAAAGACAAGAAAGACAACAAAATAACTCAAATACCTAATGGTGGTAGTGGTACCATTATAGATCGAGATTGTAAACTATGCGGTAAATCGTTTAAAAAGCCCAGCATGCTAATTCGCCATATGCGAGTTCATAATGGTGAAAAACCgtttaaatgtaatatgtgCGAAAagcaattttcacaaaaaaattctctaaaCACTCATTTACTGCGGCACACAGGCAATAAACCTTTCACATGTAATTTATGCTATATGCGATTCACACAAAATGGAAATCTGAAAATACACAAGCAAAAAGTACATAACAAGTACAGTTTGAATGCAGacgaattaaaatattcgtgCAATAAATGTTCATGTGTATTTCGTAAAATCGGTTCACTTAATCGCCATATTACGGAAGTTCACAGTATAAACGAACGAAAACGTAAACTGATAACTACTGCACCACCTCCGTCAaatgatgaaattaattttaacgaaattttttcgcaacttaacgatttaaataaatttcaagctCCACCAGTGACTGTAACGAACAGCCCAAACGACAATGATATAATACAATTAGCTGACCGAGTTGAAAACGGAATATTAATACATCGCAAAGTACAACAATTGCACACAGATCGGGGTAAAAAAATGCTAAGTTGTTTAAATTGTGGGAAACTTTTTACCCGGCCATCCGATTTACTCCGACACATTCGCGTACACACCAAAGAAAAGCCATTCGAATGCTATCTGTGTAAACGACGATTTTCAGTAAAGCGAACCCTTTCGGTTCACTATAAAACTCACGAGAGTACACTGCGCAAATTTTCGTGTAGtctatgtaataaaaatttccgTGATATTGGTACGCTTATCGTGCACGGTACTGAACTTCATCAAAATTGCAGCACATACTTGCAATGTTTTCCATGCAAAGCGCATTTCTCAAACGCCGATCAATTACAAACGCACTCGAAAGAACATAATCATCGGCTTTCGGTAACGAAACGTAAATGCTATGACACGGATGTGAAGATGCAAGATCCGATTATtgttaaccaaataaaaaagaacGAAGACACCCGAAAACGCTGTGACAAATGTATAAAAACGTTTAAATCTCGAAATGCCTTAACAATCCACACACGACGCCATTTAAATCAAAAGCCTTACAAATGTGACACATGCGATGAATATTTTGTATCGAAACCGATTCTGAATCGACACAAACTAACTCATTCGGAAGTACGTAATTTTATATGTCCTTATTGTCAGAAATCGTTTAAATCGAATCCCGATTGTCGGAAACATATTCGAATACATCAAAAGGAAATTTTAACGCCAGAACCACCGGTTGATTCCAATCCAAAGCCGATTGACCAGCCTGATATCCGACAACCTAACCTCCGGACATGTCAATATTGCAACCGGTATTTTAAGAAACCGATTGATTTACGGCGGCACGAAAGAATACACACTGGCGAAAGGCCGTTTAAATGTGACAAAtgcgaaaaatcattttcattggCATCTACACTGAAATTCCATCATCGAATTCACGAGGAAATTAAGCAGATGTTCACGTGTCACGTGTGTTTGCATAAATTTACAACGAAAGGAAGTCTTAACGTCCACAAACGAATACACACAGGCGAGAAGCCGTTTAAATGTAGATACTGTGGCACAGCATTCAGGACAAATGATCATCGTAAAGTGCACGAATCGAATCATCTTAAAATCGCCTTCGAACGCGGTGTCGATCCAAAAGACATCAAAATTATTCGATCATCGTTTGACAacataattgataattttacgTTCCATTAA
- Protein Sequence
- MLTPIDQENICYIISSGSLVPISNDNNIINPEEFCLVASEELVYNNDQQIMPLHEGEPSTSGLQIPIDESRTETLLDYKPVEMYESAIDGTTNWDIKQEKILNSYKCEHCTAQFVHLKLLNRHKRTHLYEKPFKCEQCHESFNFAVNLKVHSTNHQDTLNGTTKNMCCICNRIFRRFSSLRGHINRHKVSEYFNCEQCDEIFLAKLFYDLHLENHHKKDKKDNKITQIPNGGSGTIIDRDCKLCGKSFKKPSMLIRHMRVHNGEKPFKCNMCEKQFSQKNSLNTHLLRHTGNKPFTCNLCYMRFTQNGNLKIHKQKVHNKYSLNADELKYSCNKCSCVFRKIGSLNRHITEVHSINERKRKLITTAPPPSNDEINFNEIFSQLNDLNKFQAPPVTVTNSPNDNDIIQLADRVENGILIHRKVQQLHTDRGKKMLSCLNCGKLFTRPSDLLRHIRVHTKEKPFECYLCKRRFSVKRTLSVHYKTHESTLRKFSCSLCNKNFRDIGTLIVHGTELHQNCSTYLQCFPCKAHFSNADQLQTHSKEHNHRLSVTKRKCYDTDVKMQDPIIVNQIKKNEDTRKRCDKCIKTFKSRNALTIHTRRHLNQKPYKCDTCDEYFVSKPILNRHKLTHSEVRNFICPYCQKSFKSNPDCRKHIRIHQKEILTPEPPVDSNPKPIDQPDIRQPNLRTCQYCNRYFKKPIDLRRHERIHTGERPFKCDKCEKSFSLASTLKFHHRIHEEIKQMFTCHVCLHKFTTKGSLNVHKRIHTGEKPFKCRYCGTAFRTNDHRKVHESNHLKIAFERGVDPKDIKIIRSSFDNIIDNFTFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -