Tcon019780.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula confusa
Gene Symbol
-
Assembly
GCA_963556175.1
Location
OY744476.1:75524257-75527425[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.016 16.9 1.0 1 23 194 216 194 216 0.98
2 19 0.18 27 6.8 2.9 2 23 219 237 218 237 0.91
3 19 0.00056 0.084 14.7 0.5 1 23 243 265 243 265 0.98
4 19 0.00024 0.036 15.8 4.1 1 23 271 293 271 293 0.98
5 19 0.075 11 8.0 0.2 2 23 302 323 301 323 0.88
6 19 1.4e-07 2e-05 26.0 0.4 3 23 331 351 329 351 0.97
7 19 6.7e-05 0.01 17.6 0.7 1 23 357 379 357 379 0.99
8 19 0.11 17 7.5 6.7 1 23 385 407 385 407 0.99
9 19 0.001 0.15 13.9 4.3 1 21 413 433 413 434 0.97
10 19 0.039 5.9 8.9 0.6 2 23 488 506 488 506 0.95
11 19 6.4e-05 0.0096 17.6 0.5 1 23 512 534 512 534 0.95
12 19 0.0033 0.5 12.2 2.6 1 23 540 562 540 562 0.97
13 19 0.00034 0.051 15.3 0.5 2 23 571 592 570 592 0.98
14 19 7.2e-06 0.0011 20.6 0.2 2 23 599 620 598 620 0.97
15 19 1.9e-06 0.00028 22.5 1.4 1 23 626 648 626 648 0.99
16 19 8.9e-06 0.0013 20.3 1.1 1 23 654 677 654 677 0.96
17 19 0.00024 0.036 15.8 0.6 1 23 683 705 683 705 0.99
18 19 0.056 8.3 8.4 6.4 1 23 711 733 711 733 0.98
19 19 7.6e-05 0.011 17.4 1.2 1 23 739 762 739 762 0.97

Sequence Information

Coding Sequence
ATGGCAATATATACGCTGAAGCAAAGGATATTCATCGTTAAACGTTATTATCAGAATGGCAATTGTTCGGAAAAAGTTCAAAATGAATTTCCCGATgtattcaatcaaaatgaaTTGCCCACAAACGAACATATCAtgaaattagttaatttatttgaagaatTTGGTAGTGTTGTGTTGTACACGACTGAATCAGATGTAAAACAAACGGATCCTAGTTATGAAAATGagGGCGCCTACGAGAACCGTACAAATGTTAATCAGAATGAAGAAATATCAGAAATTAAAATCGAACAGTTGCGAGTCGGGTCGACAATCGCGAGCGAACAACATCAATCAAAAGAAGATGAATTTCTGATAAAAGATGAACTTGTAACTAGATTAGATGAGAATGTATCAAACTTGGTTGAAAATTTCGATCAGGACGATTATTATGATGTAGAGAATGAGAAAAATACTGACGATGACATCGACGAGGAAGATAATGGTGACGAAAAACAATCGATTGTTGGTGAATTTCTAGATACCCTTGCCGAAAAAACTATCGATAACCATAGTAATACAAATTTAGACGATCTATACTCATGTAAAATATGTCCGAAAACTTTTAAGATACGTCGTGcatatttgaaacatttaagtATTCACAAAAAACAGTGTCAAATGTGCGGAAAAGTTTGCAAGGATCTAATTAAACATATGGCCAAACATACCGGCGAACGTATATATCAATGTACCGAGTGTGGATCACAGTTTAAAAGTATGGAACGTTTAAAAGAACATCAGGCCGTGCATTCAGACGATCGTCCATTTAGTTGTGATTCgtgtacgaaaaaatttaaaacacgaaaacgACTTCGAGATCATGTTCGCACACATTTATCGAATGCCGATCGGCCAATTAAATGTGAAATATGTGGTAAAGGATTTCTGTCcaatttaatcttaaaaatacATTCACGTACCCATACCGGTGAAAAATCGTCGATATGCAATATATGTGGAAAATCGTTTGTATCgaataatacattaaaaatacatattcgTACGCATACGGGAGAAAAGCCGTATCAATGTCCGTTCTgtgataataaatataattcatCGGGTAGCCTAAATATTCATAAACGAATACATACGGGTGAAAAACCTTATAAATGTCAACATTGTTCTaaagatttttatgatttggcAACGTGCCGTACCCACGAACGAACACACACGGGCGACTATCCGTACAAGTGTAAAATATGCGGAAAGGCTCATAATCATacaagtaatttaaaatcacaCATGAAGCATGGTGATACCGAAGACGATCGGTATagcagttttgaaaataaaaatgaaattaacccTTTATCGAGTTCAGACGGCGAAGAATCGTTAAAAATGTCCGAAATCGAAAGTGATGAAGATTTGGAATGCGATAAATCGGAAGCAGACGAAAGGCACGAAGAGAAATGTGATATTTGTAACAAAACCTATGGTAACATGGCTAAACATATGGCAACGCATATTGGCGACCGTTTGTACCAATGTAACGATTGTGGttcccaatttaaaaaaaaagaacaactcAAAGAGCATGCGGTTGTTCATTCCGATGAAAAACCGTTTGCGTGTAGCACttgccaaaaattatttaaaacacgaaaacgtttAAAAGTTCACGAATCGACGCATTTAACGAATGCTGAGCGTCCCGTTAAGTGTGAAACGTGTGGAAAAGGTTTTCTAACAAAACTGTTACTTAATCGCCACGTTCGAATGCATACTGGAGAAAATCAATCGGTCTGTAATATTTGTGATCAGTCACTATCGTCAAATTATGCATTGAGTGTTCATATGAGAACACATACGGGTGAAAAACCTTACGAATGTCCACACTGTGAGAAAAAGTACAGTACAGCTGGTAGTTTAAATAGTCATAAACGAGTTCATACCGGTGAAAAACcgtttatatgtaatatatgcAATAAATCGTTCGTCTCAAATAACACGTTGAAAACGCATAAAGATACGATACATACCGGAGATAAGCCATATCAATGTTCACTCTGTGATAACAAATATAATTCATCGGGTGGCCTAAAAATTCATAAGCGTGTCCATACGGGTGAAAAACCTTATATATGTCAACATTGTTCTAAAGCTTTTTATGATTTGACGACATGTCGGAAACATGAAAGAACGCATACTGGTGAAAAACCGtacaaatgtcaaatatgtGGCAAAGCACATAATCAGTTAggtaatttaaaaactcatatgAAACTAGTGCATAAGCAGTCAGTGGAGCACGAATAA
Protein Sequence
MAIYTLKQRIFIVKRYYQNGNCSEKVQNEFPDVFNQNELPTNEHIMKLVNLFEEFGSVVLYTTESDVKQTDPSYENEGAYENRTNVNQNEEISEIKIEQLRVGSTIASEQHQSKEDEFLIKDELVTRLDENVSNLVENFDQDDYYDVENEKNTDDDIDEEDNGDEKQSIVGEFLDTLAEKTIDNHSNTNLDDLYSCKICPKTFKIRRAYLKHLSIHKKQCQMCGKVCKDLIKHMAKHTGERIYQCTECGSQFKSMERLKEHQAVHSDDRPFSCDSCTKKFKTRKRLRDHVRTHLSNADRPIKCEICGKGFLSNLILKIHSRTHTGEKSSICNICGKSFVSNNTLKIHIRTHTGEKPYQCPFCDNKYNSSGSLNIHKRIHTGEKPYKCQHCSKDFYDLATCRTHERTHTGDYPYKCKICGKAHNHTSNLKSHMKHGDTEDDRYSSFENKNEINPLSSSDGEESLKMSEIESDEDLECDKSEADERHEEKCDICNKTYGNMAKHMATHIGDRLYQCNDCGSQFKKKEQLKEHAVVHSDEKPFACSTCQKLFKTRKRLKVHESTHLTNAERPVKCETCGKGFLTKLLLNRHVRMHTGENQSVCNICDQSLSSNYALSVHMRTHTGEKPYECPHCEKKYSTAGSLNSHKRVHTGEKPFICNICNKSFVSNNTLKTHKDTIHTGDKPYQCSLCDNKYNSSGGLKIHKRVHTGEKPYICQHCSKAFYDLTTCRKHERTHTGEKPYKCQICGKAHNQLGNLKTHMKLVHKQSVEHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-