Tcon022084.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744476.1:117561311-117566074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.3e-05 0.0019 19.8 0.5 2 23 85 106 84 106 0.97 2 20 1.9 2.8e+02 3.6 3.2 2 23 109 127 108 127 0.90 3 20 0.0032 0.47 12.3 0.8 1 23 133 155 133 155 0.94 4 20 2.5e-05 0.0037 19.0 2.9 1 23 161 183 161 183 0.98 5 20 2.7e-05 0.004 18.8 1.6 1 23 189 211 189 211 0.98 6 20 7e-08 1e-05 27.0 0.4 2 23 218 239 218 239 0.97 7 20 2.9 4.4e+02 3.0 0.4 1 11 245 255 245 257 0.85 8 20 6.8e-05 0.01 17.6 3.2 2 23 387 408 386 408 0.97 9 20 0.26 39 6.3 1.9 2 23 411 429 410 429 0.78 10 20 2.6e-05 0.0039 18.9 0.6 1 23 435 457 435 457 0.98 11 20 0.0018 0.27 13.1 2.4 2 23 464 485 463 485 0.91 12 20 1.9e-05 0.0028 19.3 0.4 2 23 584 605 583 605 0.97 13 20 8 1.2e+03 1.6 2.1 2 23 608 626 607 626 0.74 14 20 0.00097 0.15 13.9 4.4 1 23 632 655 632 655 0.97 15 20 0.00043 0.064 15.0 4.4 1 23 661 683 661 683 0.99 16 20 2.4e-05 0.0036 19.0 1.8 2 23 692 713 691 713 0.98 17 20 5.1e-06 0.00075 21.1 0.4 3 23 721 741 720 741 0.98 18 20 6.8e-06 0.001 20.7 2.4 1 23 747 769 747 769 0.97 19 20 0.0016 0.24 13.2 2.5 1 23 775 797 775 797 0.93 20 20 4.4e-05 0.0066 18.2 1.3 1 23 803 826 803 826 0.98
Sequence Information
- Coding Sequence
- atgaattttccagaCAATGAAGTGGAAATCAAAGTAGAACCAGCAATAACTATATATGACACAAAACCTTATTTGGCAGGCGAAGATGATGTCCTAAATAATACGGTTAATAATGAACAAAACAGTTTTAGTAGTGATTATAGTTGTAGTGACGACGACATAGATAAATCATATTCACCAAGTGATAGGAAAGGCGGGGTATGTACACAGAATGAACAAGACCACAAAGAATGTAAAAACAAACTGATATTAAAATGTGACGAATGTGGCAAGGAGTTTGACCGCCGTGCTCGATATTTAAGACATATGAACGTGCATAAAAATCGATGTGAGATTTGTGGTAACAAGTTCCACAATCGTGAGAAACATATGAAAATACACACAggagaaaaaacatttttatgctcACAATGTGATGCTAGGTTTATTAATATAAGTAGATTAAATCATCATATGATAGGCCATTCAACAGAACGTCCGTTCGAATGtgatatttgtcataaaacgtttaaatCGACTGATGGATTGCGTGGACACAAGAAAACCCATTCGACTGAACGACCACATAAATGTGATCAATGTGGCAaaggatttttaaataaaggcgATTTGACGAAACATCAAAATGTCCACACGGGAAGAAAACCGGCCGTGTGTCAGGTCTGTGGTAAAGGATTTTCATCAAATGATTCGCTTAAAGTTCATATGCGAACTCATACTGGTGAAAAACCTTACGAATGTCAATACTGTGGAAATTCTACGAAAAGTGTTCAAATTGAATTCCCCAGTGTATTTAATAGCCAGAGCGATCCATTATCGTGTGATAGCATTATAGAGTTAGTAAATCTTTTCGAGGAATTTGGAACTGTCTATCCCAATACAGTAAAACATGATTTAGTGTTGGAGAACGATAGCagagaagaagaatttgaaataaaaattgaaccaTTTATTTCCACATATAATAACGATGGGTTTGACCATAATACACAACCCCAAAGTGGTGAAGGGGCCGAGGATGAAAACAACAAACTTGATACAAGACTGGCCCGACTTCCCGAAGACCATGAATTTAATGATGATATAAAAATTGCACATACCATAAAATTGGATGTGATTAATGAATATATAGAAAAggatttatccaaattaattctaaaatgtaaaatttgtcaTAAAGAATTCGATAAAGAAATGTATCTAAACCGGCATATCAAATCACACGGCAAAACATGTGAAATATGCggtaaaaaataccaaaaccgTGAGAATCACATGAAAAAACATTCAGGTGAAAAATCATTTCAGTGTACAGAATGCGGAGCaagatttataaatatgagtcGATTAAATAATCATATGACATCACACTCGGAGGAAAGGCCATTTGCGTGTATCACAtgtcaaaagaaatttaaatctCGAGAACGACTGCGAGTACATCAAAAGACACACAATACGGATCGGCCAAATAAGTGTGAAggttcatcaaaaattgaaaatgttgaagTTGAGCCTGATGcatctaaatttgaaattgatttaaatatcaCCGACTGCTTAAAAATATCAGAATATCTTAAAATAGAGCATGAGTCTACAAATGAGCAATATACTGAggtaaaaaatgaaatcattgatAATGATAAACTAAGTACGTCAGCTGAAAGTGAGGCGGAAGAGTACGAGAAATGGTCTGTAAATGAAAAgacaacagaaagaaaacccaTGACGGGACGCTTGCGCATAAAATGTGAAGAATGCGATAAAGTATTTAATCGTAACTGGGCTTATGATCGACATCGCAAAGTACATGAAAACACTTgcaaaatatgcaataaaagaattataaatatgAAAGCGCATATGGAAGTGCATGATGGTGTTTTACGCCATGAGTGCAAAATTTGTTaccaaaagtttaaatttaaggaTCGTTTGAATAACCATATGGCCACGAAACATTCCGAAGAACGCCCGTTCAAATGTGAAACATGTCAAAAcacttttaaaactaaagatCGACTTCGAGAGCACAAGAAAACTCATATGCCAATGGAAAACCGGCCTAAAAAATGTGAAACGTGCGATAAACGGTTTTTGAACAATGTCGATCTAAGAAGGCACATACGAACGCATACAGGAGAAAAAATTACACTGTGCAATGAGTGCGGAAAAGCTTTCAAAACCAATTGGGAATTAAAAATGCATGGACGTATGCATAGTGGTGAAAGGCCCCATAGTTGtgaaatttgtggtaaaacgtTCATGCGAAATACTACATTGGTTATTCACAGACGACGTCACATGGGCGAAAAGCCATACAAATGTCGTTATTGTGATAAAACATTTACTGATTCAGGAGGACGTAGTATGCATGAACATGTCCATGTAGATGACAGACCTTATAAATGTCGCATATGCAACAAAGCGTACAATTTTGGCAGCAGTTTAAGATCACACATGAAAATTAGTCATTCCTAG
- Protein Sequence
- MNFPDNEVEIKVEPAITIYDTKPYLAGEDDVLNNTVNNEQNSFSSDYSCSDDDIDKSYSPSDRKGGVCTQNEQDHKECKNKLILKCDECGKEFDRRARYLRHMNVHKNRCEICGNKFHNREKHMKIHTGEKTFLCSQCDARFINISRLNHHMIGHSTERPFECDICHKTFKSTDGLRGHKKTHSTERPHKCDQCGKGFLNKGDLTKHQNVHTGRKPAVCQVCGKGFSSNDSLKVHMRTHTGEKPYECQYCGNSTKSVQIEFPSVFNSQSDPLSCDSIIELVNLFEEFGTVYPNTVKHDLVLENDSREEEFEIKIEPFISTYNNDGFDHNTQPQSGEGAEDENNKLDTRLARLPEDHEFNDDIKIAHTIKLDVINEYIEKDLSKLILKCKICHKEFDKEMYLNRHIKSHGKTCEICGKKYQNRENHMKKHSGEKSFQCTECGARFINMSRLNNHMTSHSEERPFACITCQKKFKSRERLRVHQKTHNTDRPNKCEGSSKIENVEVEPDASKFEIDLNITDCLKISEYLKIEHESTNEQYTEVKNEIIDNDKLSTSAESEAEEYEKWSVNEKTTERKPMTGRLRIKCEECDKVFNRNWAYDRHRKVHENTCKICNKRIINMKAHMEVHDGVLRHECKICYQKFKFKDRLNNHMATKHSEERPFKCETCQNTFKTKDRLREHKKTHMPMENRPKKCETCDKRFLNNVDLRRHIRTHTGEKITLCNECGKAFKTNWELKMHGRMHSGERPHSCEICGKTFMRNTTLVIHRRRHMGEKPYKCRYCDKTFTDSGGRSMHEHVHVDDRPYKCRICNKAYNFGSSLRSHMKISHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -