Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744476.1:212648814-212650037[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3 6.1e+03 -1.3 0.1 17 27 53 63 50 64 0.84

2 8 1.8e-07 0.00037 21.8 0.6 12 44 145 174 135 174 0.89

3 8 0.0013 2.5 9.5 2.3 18 44 182 205 176 205 0.91

4 8 0.22 4.5e+02 2.3 3.0 18 38 219 240 213 241 0.81

5 8 1.1 2.3e+03 0.0 2.1 6 23 236 252 235 268 0.73

6 8 0.13 2.7e+02 3.0 1.3 18 26 275 283 263 294 0.81

7 8 0.22 4.4e+02 2.3 2.0 13 29 298 314 291 324 0.76

8 8 7.9e-06 0.016 16.5 0.9 6 40 320 350 315 353 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3	6.1e+03	-1.3	0.1	17	27	53	63	50	64	0.84
2	8	1.8e-07	0.00037	21.8	0.6	12	44	145	174	135	174	0.89
3	8	0.0013	2.5	9.5	2.3	18	44	182	205	176	205	0.91
4	8	0.22	4.5e+02	2.3	3.0	18	38	219	240	213	241	0.81
5	8	1.1	2.3e+03	0.0	2.1	6	23	236	252	235	268	0.73
6	8	0.13	2.7e+02	3.0	1.3	18	26	275	283	263	294	0.81
7	8	0.22	4.4e+02	2.3	2.0	13	29	298	314	291	324	0.76
8	8	7.9e-06	0.016	16.5	0.9	6	40	320	350	315	353	0.80

Sequence Information

Coding Sequence: atggaacaacaTACTCCAATATGTCGTACTTGTTTGGCCGAAGCAAGTAGTTCTATTTTTAAAACCGTGTTATATGATGAAGAGGAGCTGTCGTTGGTCGAAATCCTTACTGAGTGTATAGGAATAAAAgtAACCGAATCAGATGAgatatcattaaatatttgtgacGTTTGTACGAaagaattagtaaaattttatgagtatcgcaaaaaatgttggaactcacaaaatattctttatcaGCGACTAGAAGAGAGTAAAATTGACCCGTTAAAATTAGAAGTGTTAAGTGATTCAGACGTGGATTACGAATCTGATTATTGTTTAGAAAAAGAAGATGAAGGCCCAGAAAATTCTGAATTTTGTATAGAAtctgtatcaaataaaaatgaatcaacttttcaatataatatacttgtggataaaacattaaaatctagAAATGCTGTTAAATGTCAactatgcaataaaatatattcacgtaAGGATGTTTTTCTGAGACACTTGCGAAGTGTACACAATATACTCGAATTACACCAATTTGAATGTAAACATTGTAACAAATCATTTCGACGACTAAGCAATTTAGGACTACACATAAcgaaatttcatcaaaacaaaaatctggTTGAAGTTGTAAAATCGGCCACATATATGTGTCACCATTGCGGTCTCAAGTTAAAAAATCAACGAAGCTTAACAGAACACGTTCGACGCCACACTGGGGAAAAACCGTACAAATGCAATTTATGTGAATATCGTGCAGTACAACGTTACAGTATTAATACACATATGAGGACGCATACGGGTGAACGTCCTTTTGAGTGTAACATTTGTGGGAAGTTATTTCGAACATCGAGTGCACGGGCAAATCATCGTCACAGTCATTCCGAAGAAAAGCCATATGAATGCATTGTATGTTcaaagaaatttaaacaaaaagacGTTTTTAAGGAGCACATGATAATTCATGATCCAGATAAATATATTGCATgcaaattttgtggtaaaaaatTTGCTCGGAAGGATAATCTAAAGACACACATTAAGCAGCACACTGGCGAGAAACCACATGTATGCGAAGTCTGTGGTAAAGGTTTTATTCAACGGCACTGTTGGCGAAACCACATGACAAATCAtcacaatcaataa
Protein Sequence: MEQHTPICRTCLAEASSSIFKTVLYDEEELSLVEILTECIGIKVTESDEISLNICDVCTKELVKFYEYRKKCWNSQNILYQRLEESKIDPLKLEVLSDSDVDYESDYCLEKEDEGPENSEFCIESVSNKNESTFQYNILVDKTLKSRNAVKCQLCNKIYSRKDVFLRHLRSVHNILELHQFECKHCNKSFRRLSNLGLHITKFHQNKNLVEVVKSATYMCHHCGLKLKNQRSLTEHVRRHTGEKPYKCNLCEYRAVQRYSINTHMRTHTGERPFECNICGKLFRTSSARANHRHSHSEEKPYECIVCSKKFKQKDVFKEHMIIHDPDKYIACKFCGKKFARKDNLKTHIKQHTGEKPHVCEVCGKGFIQRHCWRNHMTNHHNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01455156;
90% Identity: iTF_01455156;
80% Identity: iTF_01455156;