Basic Information

Insect: Tipula confusa
Gene Symbol: ham
Assembly: GCA_963556175.1
Location: OY744475.1:108753592-108755106[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.4e-05 0.029 15.7 0.2 16 41 293 315 284 317 0.84

2 3 2.4e-05 0.049 15.0 2.2 17 44 322 346 315 346 0.88

3 3 0.19 3.8e+02 2.5 0.7 18 41 352 372 347 373 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.4e-05	0.029	15.7	0.2	16	41	293	315	284	317	0.84
2	3	2.4e-05	0.049	15.0	2.2	17	44	322	346	315	346	0.88
3	3	0.19	3.8e+02	2.5	0.7	18	41	352	372	347	373	0.84

Sequence Information

Coding Sequence: ATGCTACCAAGCCCAAAACAAGGTGCTGTCTATCCCTTAATGGGGGGAACAAATTTACAACAATTATCGAACACCAATAATACAAATACAACATCGTATGCTCCATTCGATTTATCACCATCGTCACGGTCTGCACATTTTTTGCAGCCGCAATCGCATGCACCAAATGATCAACCACTCGATTTGCGTGTCGATcacaaaaaaatcgattatatgcaacaacaacaacgtttCAATCATAGGATTAAAGATGAGAATAGTAATTTAGTTATggttaacaataataataacactttaggcaataataataattttcttagtaatttaattagaaataatagtTCACCAAgtcctaataataataataataataataatgatagtacgaataataataataataataacaataatgatactcaaataaataataataattacgaaAGTCACGACGATAGTAGTAGTACGAAAAAGACAATTAGTAATACgttaataaatgttaaagaaGAATTTAGGATACCGAATTTGAGTGGACACAACTCAAGTATGTTTCCGGCCCCACCGACAATCCACCCTCTAATGTTAGAGGCGATGGCAAAAGCAGCAAGAATACCATATCGTAATCCATTTGTTACACCGCGGCCACTATTCGGACTGCTACGACCCAAACAAGAGATGCTCGCTAATATTCCACAAATGTTACAAAATGGattaaccaataataataataacaacaataataatagtagtaataaaaatttaaataataataataataatactaacattccaaataataataataataataatagtagtagtaatagtaaTTCTGATGTTCCGAATAATGCACCAGCGCACATAAAAAACAAAGATCGTTACGCGTGTAAATTTTGTGGTAAAGTATTTCCACGATCCGCTAATTTAACCCGCCATCTGCGAACCCACACGGGCGAACAACCctacaaatgtaaatattgtgAACGTTCGTTTAGTATATCGAGCAATTTACAGCGACACGTACGTAATATACACAATAAAGAGCGTCCATTTAAATGTGCCCTGTGCGAACGATGCTTCGGACAACAAACCAATTTAGATcgtcatttaaaaaaacacgaGGCCGATGCTGTTTCGCTGGGCGTCGGATTCGATGAACGGCTGCGTGGTATTCGGCAAAATTCACGCGGTACCCCCGAAGATTCGTATTTCGAAGAGATACGATCGTTTATGGGTAAAGTAACACAGCTACCATTACATTTACGTGCACAACAAATGGATATGACACCGTCACGGTGTTCATCGTCGTCCGAACCATcatcaccaaaaaatttattacaaataaaactcgaacaaaatatgaatataaataataataataataacaataataatgatagtaataataataataacgatagtaataataataataataatgatcctgataataatgataataataacaataataatacgaCAACAAATTGTAATGATCATGTTCAAGTTACCTGA
Protein Sequence: MLPSPKQGAVYPLMGGTNLQQLSNTNNTNTTSYAPFDLSPSSRSAHFLQPQSHAPNDQPLDLRVDHKKIDYMQQQQRFNHRIKDENSNLVMVNNNNNTLGNNNNFLSNLIRNNSSPSPNNNNNNNNDSTNNNNNNNNNDTQINNNNYESHDDSSSTKKTISNTLINVKEEFRIPNLSGHNSSMFPAPPTIHPLMLEAMAKAARIPYRNPFVTPRPLFGLLRPKQEMLANIPQMLQNGLTNNNNNNNNNSSNKNLNNNNNNTNIPNNNNNNNSSSNSNSDVPNNAPAHIKNKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCALCERCFGQQTNLDRHLKKHEADAVSLGVGFDERLRGIRQNSRGTPEDSYFEEIRSFMGKVTQLPLHLRAQQMDMTPSRCSSSSEPSSPKNLLQIKLEQNMNINNNNNNNNNDSNNNNNDSNNNNNNDPDNNDNNNNNNTTTNCNDHVQVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01459046;
90% Identity: iTF_01457723;
80% Identity: iTF_01455250;