Tcon001829.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- pol
- Assembly
- GCA_963556175.1
- Location
- CAUVYK010000588.1:1-11073[+]
Transcription Factor Domain
- TF Family
- CG-1
- Domain
- CG-1 domain
- PFAM
- PF03859
- TF Group
- Unclassified Structure
- Description
- CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein [2]. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-15 2.2e-10 41.6 0.3 80 116 1 36 1 36 0.95
Sequence Information
- Coding Sequence
- tgcaTTTATGGATGCTATGTGCACTCAGCAATTCTACCTACATTTCATCGCAGATGTTACTGGCTATTACAGaatccTGATATTGTATTGGTACACTATTTAAATGTACCATATCCAGATGATAATAAAATGGCAGTGCTTGCACCTAGTTTATCGTTATGGGGTGATAAAAAGGAATGGACGAAAGAAGAACTTGTCAGTCAATTGAAGCCAATGTtttttagTGAAGATGAACCAGATTCAAATAATGTAATTGAAATTTCGaCTGCTGAAACTGTTGAAGCGATTGTCGGTCAATTAATGGAAAAACAGCGCCTTGCTCGTCAAGCAGCACTCGTTAAACAATTGGAATGTGGTTGTCCTGATTCAACATGTGCTGATGGTAAATCATGTTCTCATCCTATGAGACGAATAACAACCGTGAAAAACAACAATGACAATAAACGCAATGAAACAGTTAATCAAAGTAGCAATCAAGTAACTAGTACAACACCAAATGTGTTAATTGGACAAAggatATACCCCCATTGGTTAGAACGACGCGGAGGTCGTGTTGGTggtacaaataataataatagtactaATCATCAAATTAATGCAAATGTGAAAGCCCAAAAACAACAACGAGTGTTTCACTTGGAACAGCAAAGTGAAGACCCTTACGAAGAATATGAAGAATATGAAGAGTATATTCAAAACTATGAGGATAACGAAGATGAATGTTCCGATCCAACTGGtgagAGATATGGAAATAATATCCTAGTGGACTTCTTCGTGTTACCTGGTTTAACCTCATTCGACGGTATAATCGGTGATGACACCTTAAAAAAGGTAGAAGCCATGATAGATAGGAGAGAAAACATACTAACAATCTCTCCAGGTGTCAGTATTCCATTGAAGGAGAAAATCTTGACCCAAGTAAACAATATTGAGGTCAGAGATAGCCATTTGGACGGAGAAACGAagctaaaattgaaaacattaatCAATGAATTCTTACAAATTTTTGGACCGATCAATGACGAACAAACCATAGATACAACCGTGAGAGCAGAGATAAGAACAACAACGGAAGATCCTGTATATACAAAGACATATCCGTACCCCATAAACATGAGGTCCGAAGTTGATGAGCAAGTAGCGCAACTTTTAGAAGAGGGAGTAATCAGACCATCAAAGAGCCCATATAATTCGCCCATATGA
- Protein Sequence
- CIYGCYVHSAILPTFHRRCYWLLQNPDIVLVHYLNVPYPDDNKMAVLAPSLSLWGDKKEWTKEELVSQLKPMFFSEDEPDSNNVIEISTAETVEAIVGQLMEKQRLARQAALVKQLECGCPDSTCADGKSCSHPMRRITTVKNNNDNKRNETVNQSSNQVTSTTPNVLIGQRIYPHWLERRGGRVGGTNNNNSTNHQINANVKAQKQQRVFHLEQQSEDPYEEYEEYEEYIQNYEDNEDECSDPTGERYGNNILVDFFVLPGLTSFDGIIGDDTLKKVEAMIDRRENILTISPGVSIPLKEKILTQVNNIEVRDSHLDGETKLKLKTLINEFLQIFGPINDEQTIDTTVRAEIRTTTEDPVYTKTYPYPINMRSEVDEQVAQLLEEGVIRPSKSPYNSPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -