Tcon041720.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- bab1
- Assembly
- GCA_963556175.1
- Location
- OY744477.1:180405000-180406764[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-06 0.011 16.8 0.0 11 41 356 386 354 389 0.85 2 2 0.032 84 4.3 0.0 13 24 419 430 415 431 0.86
Sequence Information
- Coding Sequence
- ATGTTACCACAGCAGTATTGTTTAAGATGGAAATATCATCATAGTAACTTACAGACGATGTTTTCACAATTATTAGACCGAGGTTGCTTTTGTGATGTGACACTCGCTTGCGAGGGTCAAACGCTTAAAGCTCATCGTGTAGTTTTATGTGCTTGCAGTACATACTTTGATTCGATATTGACAAATTGTTGTTCGGAAAAGGATCCGATAATCATTATGAGAGATGCCAAATTTActgatataaaatgtttaattgaatttatgtaTAAAGGTGAGATTAATGTAGACCATGGAAGTTTGGCGTCTCTATTAAAAACCGcagaagaattaaaaataaaagggcTGGCGGAGGTTTCGTGGCGAGACGAAGAAGGACATCATAATTCacaatcaaatcaaacaaaagaTAATAAACAGTGTAGCACGACATCTAGTTTAGATAATACCGCAACGGCTGAATCTTTTGTTCTCAAAGATGAAAAAAACATTCCAATTTTAACTCCAATAAATACAGCTTTAGCAAAAGATTCGCCATCAAATATACAGCAAAGTCTGCCGATTAAAAAGAAACGCGGTCGCCCTCCTTTGGATGCTGATTCTACTTATGAATCGTATAATAAaTCAATTAAGTTATCtaaacaaaaatctaatctTGTAACGAATACATCGTTTCCGGATAGCGCACATTTAGTCACGGTTCTTATGGATGAAAATTCTAAAGAGGATAATTCTATTTCAAAAGGTAACTtattaaacgaaaataataatgtttcatGGGCCGAACAAAATTTAACGACACATAtggattatgatgatgatgagcctataccaaatataattccaaaaattgaaCGCCCCGAAACACCATACGATAATATTCCACATCCTGATGATTTATCATCGCCCAATAGTCCATTAGATCCAGGTTCTTCAATATCACAACCTGTATTTTTGACTCAACAAGAAATCGAAGAATGGAAAGATgttataaaaatgaatgattATTTGACTCGGGGTCGGAGACCTCAATTTTGGGAGGAACCATTTTGTAAACGGGTTATGGatgctataaaaaataaaaatttagaaatgaaaaaaGCTGCACAAATTTTAGGAGTTTCTTATGGCACTTTATATGGTCGTTATCGAGAAACATATGGCTGCTTAAAACATCCTTATAGgGGGCCGTTCATGGTGTCTAGACTTAGAGAATATTTTACAGATCCAGCTCcaactgaaattttaaatttgctacAAAAAGGTGGATTATCTCTGCAGCAAGCAGCTGAGCTAATGAATTCTTCGACGaaAAGTGATTGGCTATCTTATGATGACGCAGAAAAAGATCATATCGATGTTGATATTGATTCAACTGATAATTTGGATAATAAAGATAACGATGaagataataataaagaaaacgataatgaaaaaaataatgaaatcagtGATAAACAGGACAAAACTAGTAAACAGGgattaattttaccaaatcaTCCCGAAGTAAGTttgataaatgttaaaaagacTTCTAttaataatgatataaaaacGGAGACCAAATCAACGTAA
- Protein Sequence
- MLPQQYCLRWKYHHSNLQTMFSQLLDRGCFCDVTLACEGQTLKAHRVVLCACSTYFDSILTNCCSEKDPIIIMRDAKFTDIKCLIEFMYKGEINVDHGSLASLLKTAEELKIKGLAEVSWRDEEGHHNSQSNQTKDNKQCSTTSSLDNTATAESFVLKDEKNIPILTPINTALAKDSPSNIQQSLPIKKKRGRPPLDADSTYESYNKSIKLSKQKSNLVTNTSFPDSAHLVTVLMDENSKEDNSISKGNLLNENNNVSWAEQNLTTHMDYDDDEPIPNIIPKIERPETPYDNIPHPDDLSSPNSPLDPGSSISQPVFLTQQEIEEWKDVIKMNDYLTRGRRPQFWEEPFCKRVMDAIKNKNLEMKKAAQILGVSYGTLYGRYRETYGCLKHPYRGPFMVSRLREYFTDPAPTEILNLLQKGGLSLQQAAELMNSSTKSDWLSYDDAEKDHIDVDIDSTDNLDNKDNDEDNNKENDNEKNNEISDKQDKTSKQGLILPNHPEVSLINVKKTSINNDIKTETKST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054446;
- 90% Identity
- iTF_01457496;
- 80% Identity
- iTF_01454965;