Tcon017202.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- bab2
- Assembly
- GCA_963556175.1
- Location
- OY744476.1:23765759-23767906[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.7 2.5e+04 -3.6 0.2 29 36 238 245 238 245 0.84 2 3 3.5e-12 9.1e-09 36.2 0.0 2 45 411 454 410 454 0.92 3 3 0.26 6.6e+02 1.4 0.6 4 20 544 559 543 559 0.91
Sequence Information
- Coding Sequence
- ATGAATAGCAGCGAAGGACAAACGTATTGTCTCCGATGGAACAATCACAAATCAAATTTGGTCGAGATACTCGACGCACTTATCAAAATCGAATCGTACGTTGATTGTACGATATACGTTGATGATCATGTACAATTTAAAGCCCATCGTGTTGTGCTCGCAGCTAATTCGCCATATTTTCAAACGATACTCCAAGGTGTACCGATGGATCATTGTACGATACTATTTCCGGAGGTGCAAGCGTTCGAAATGCGTGCCCTTCTCGAATATATGTATACGGGCGAGGTGAATGTGACCCAATCACAGATACCACGAATTATGAAAATCGCACGTGATTTAGAAGTTAAGGGACTATACGATATGGCCGATTTAAAAGACTTGAAAGATGAACCTCAACATTTTAGTGGAATTAAATCTTCATCGACTAATAAtagcataaataataataataataataacaacaacagtagtaatagtaataataatagtaatcatcatcataataataatagtaattcgTCGACATCATCCACAACTCATTCCActagtaatattaataatagtaataatagtaataatcatCATACGAATAGTAACAACAGTACTATACcaaatcatcatcaacatcaatcATCGCCGGTCATATCAACGTCGACAAATATAACACAGGCCCAAAGTAGTTCATCATCGCCGCCATATAGTTATAAATCGCCGTATTCGAGTTTATATTCACGGTCGCCAGTGCCTAGCGGTGCCACAGATCGTTTAGTACAATGGCCACATTTACCACCCACCTTGCCTACACAGCATTTACACAATGCGGCGGCCGCTGCAATGCTTTCGTCCGTATACGATTCAGGATCGGATATGAATCCATtgaaacgtaaaaaattatcatcgatATCGAGTATGCTTATGTCACGCGATACACCAATTTTACGTAATGTCCTAGCCCAACCGAATGTTGCCGATTCGTCACAACAACCGGTTCCCCTCGTCTTTAAACCATTGGACAACACAGATCGTAACGATCGTCATAATTCGCATTCGAACGGTACTGATTACTCGGATAAGAAAATTAAGTACGAGGAACCTCATTCGCCATACACCGATAAATCGTTTGAAGACGATTCAATGGATCCCGGACAATCGTTTAGCGGATCAGATTCGAGAATAGCATCGTATGTGCCACAACAGAAACCGGAATGGAAACGTTACAAACAATATACACGTAATGATATTTTATCGGCGATCGATTGTGTCCGAAATGGTATGTCGGCGTTGCAGGCGTCACGTAAATTTGGTGTACCGTCGCGCACCCTATACGATAAAGTGAAAAAATTGGGTATAACGACGGGACGGCCGATGAATCGTAGTATGAAACGTAGTCCAAGTCACGGTGGTCATATAAATAGTCAGGCTGGATTTCCGTACGGTTTGAGCGGTACAAATAGTCCGTTTGGACATCATCAACTTGAAAATCCGTCACAATCGAATGATAATGATCGTGATCATTTACCACCGACGATACCACATCCGGCCGCCGCACTATTAGACGCCACTTTTTTACAGCAAGCATTAGAAGCACGTGGTGGTGATATAGCTGGTCGTGAAGCCCTTCATGCTATGGCATTTGCGGCTGCGGCTCATGCCGCTGTCAACGGTATATCAACAAGTCCGGGTACACATGGTACGGCACGATCACCAAGTCCGGGTATACTAATGAAATATGTTCGCCCTTCGACACCATCGCCAATGTCGTCACATCATCCGCATCACAATAGCGATAATATGATGAAAGATGTGGACGATGATCATGTCGAAGATTTATCAATGTCGAAAAAAGATTCATCCGATCGTTCGACATCGTCACCACAGTCACATCATAGTGTAAGCCCGCCATTATCGCCGCCactaccaccaccaccaccactacTAAATCAGATGCATGTGCATCAACAACTAGGGGTTATAGTTCCACCAATGAATAAAGTTTCCACCCCTATGGATGATTACAGCAAAGATGTGAAACGAGAAATTTTAACCACCGAAGAAGATTCGAGAGATTCGATTtag
- Protein Sequence
- MNSSEGQTYCLRWNNHKSNLVEILDALIKIESYVDCTIYVDDHVQFKAHRVVLAANSPYFQTILQGVPMDHCTILFPEVQAFEMRALLEYMYTGEVNVTQSQIPRIMKIARDLEVKGLYDMADLKDLKDEPQHFSGIKSSSTNNSINNNNNNNNNSSNSNNNSNHHHNNNSNSSTSSTTHSTSNINNSNNSNNHHTNSNNSTIPNHHQHQSSPVISTSTNITQAQSSSSSPPYSYKSPYSSLYSRSPVPSGATDRLVQWPHLPPTLPTQHLHNAAAAAMLSSVYDSGSDMNPLKRKKLSSISSMLMSRDTPILRNVLAQPNVADSSQQPVPLVFKPLDNTDRNDRHNSHSNGTDYSDKKIKYEEPHSPYTDKSFEDDSMDPGQSFSGSDSRIASYVPQQKPEWKRYKQYTRNDILSAIDCVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRSMKRSPSHGGHINSQAGFPYGLSGTNSPFGHHQLENPSQSNDNDRDHLPPTIPHPAAALLDATFLQQALEARGGDIAGREALHAMAFAAAAHAAVNGISTSPGTHGTARSPSPGILMKYVRPSTPSPMSSHHPHHNSDNMMKDVDDDHVEDLSMSKKDSSDRSTSSPQSHHSVSPPLSPPLPPPPPLLNQMHVHQQLGVIVPPMNKVSTPMDDYSKDVKREILTTEEDSRDSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454973;
- 90% Identity
- iTF_01456157;
- 80% Identity
- iTF_01454973;