Tcon032300.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- -
- Assembly
- GCA_963556175.1
- Location
- OY744477.1:54202069-54202646[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-11 6.4e-08 33.5 0.0 2 35 10 44 9 46 0.92 2 2 0.027 71 4.6 0.0 1 13 151 163 151 168 0.86
Sequence Information
- Coding Sequence
- ATGCCCAGAACACAAAAAACCTACGACGAATCTGAATTAAAAAGAGCATTAAATGAGATAAGGAAtggaaaaatcagtaaaaaggCAGCATCTAGGATGTATAATATACCTAGATCTACTCTACAGTTCAGACTAGGACTAAATTTCTCGAAAGTTTGCCCAGGCCCACAAACAATACTAACCAATGAAGAAGAAGAACTCAAGGATTTTTTAGAAGCGACTGATCGTGCTCATCCATTTGGAGAAGACAAAACTCCAGGTCAAGGTTGGGTTAAATTATTTCTCAAGGGACATTCGTCTTTGCTGTTTAGAGCGGTCGACCCTGTCTCAAAAGCAGGTGCAACCGTTGCTGCCTCTGACGTACATTCGTGGTTTGATAATATTGACAATTTGTTAATAGAACATAGTTATCGCGACATATTAAACGATCTAATGATAATCTTTAATGGTGATGAGACGAATTTTCAAAGGGCTCTCGAAATGTATATGAGATTGATAAAAGGTTAG
- Protein Sequence
- MPRTQKTYDESELKRALNEIRNGKISKKAASRMYNIPRSTLQFRLGLNFSKVCPGPQTILTNEEEELKDFLEATDRAHPFGEDKTPGQGWVKLFLKGHSSLLFRAVDPVSKAGATVAASDVHSWFDNIDNLLIEHSYRDILNDLMIIFNGDETNFQRALEMYMRLIKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -