Tfem010164.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tiphia femorata
Gene Symbol
-
Assembly
GCA_944319705.1
Location
CALUEQ010000272.1:216614-220235[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.54 49 4.8 1.8 1 23 575 598 575 598 0.97
2 9 1.9e-05 0.0017 18.8 0.7 1 23 604 626 604 626 0.99
3 9 0.12 11 6.8 1.1 1 23 632 654 632 654 0.97
4 9 9.5e-05 0.0086 16.6 0.2 2 23 661 682 660 682 0.96
5 9 0.72 66 4.4 0.3 2 23 689 711 688 711 0.94
6 9 8e-05 0.0073 16.8 3.0 1 23 715 737 715 737 0.98
7 9 0.036 3.3 8.5 2.4 1 23 742 764 742 764 0.98
8 9 6e-08 5.5e-06 26.7 0.3 1 23 770 792 770 792 0.98
9 9 0.00015 0.014 16.0 1.2 1 21 797 817 797 818 0.95

Sequence Information

Coding Sequence
ATGGATATTCAAGAAAAAGCAGTTTCTGTTTCTTTTAGGTGTAGTTCGAATTCAGTGAAACAAGATGATGGGCTACCACAGTGTGTTTGCTTGAGATGTTTAGGAACCTTGGAGTTTTTATGCGACTTCTATGAACGCTGCCATCTGACACAGAAGGAACTATTGGAAGCTAGTCAAAAAACTGGAGATACAATAAGAGTACCGGACATTCGACGAGAGAATGACAGTGAAGCAGACAAAGAAAATACTTTACGACATGGTGAAATTAAGCATAAGATAAAAGCATCCACTGATTATGCAAAGATATCAAGGAAAGAGAGTAATAGAATGAACCATGAAGTTAAGAAAGAAAATACTAAACCTCGAAACTGTGAGTTTAATAAATGTTTGAGTGTGTCAAATTCTAATGTGACAGAGAATAATTCGCAAATAACAGTATCATGTACTTTGAAAAGATTGGTATTTCAAGCAGATACAGTGCATGATCAAGCAAAGAAATCAGAGTATAATAATGTGGATGTTCCCAAGAATGAAAAAAGTTTACAAGAAAGTAAGGTGCATATACATGCACCGAAAAGTATATCTCGAGGAAAATTATTGGAGCCTCCATTAATACCAGAAGCACTGAATTCTATAGTGGATAAATTTCAGGAAGCAAAAGAATGTGAAAAGGAACCTTCCAGGTTATCAACTCGCCGCAGACGGTGCATTAGAAAACCTTATGTAGATCAAGTGTATAAGGCAAATTGTTCTCTATTGAAGCCTAGAAATAGAAAAAAGGAAAAGATGTATGACAATGTAGAAGATATTAATATTCGACCCAAAAGGCATTGTCTGCGTGCAATTTCTACAAATAGTAGTATAAAAAATAATATAGGTGTATCAGTTCCTGAACTACCTAATGATATTCTGTTCGATAGAGTTCAAATTGGTGAAAACGATGCAATGAGCATTTCGTCTGTTCAAGTTCAGGATAATGAAGCAACGAGGAGTAAAGCAGTATCTGTTATTGTTAAACAAGAAAAATCAGAAGATAGTTGCTCAGAAGTTTTAACATCTAAAAAATCATTATGGAACGAAGATAAAGAAATACTCTGTGGACCAGAAAAATTAAAATCTCCAAAAACTAGTGCTTTACCTAACATCAGCCCTTTGCCTGGAGATGAAGCAGACATACATCCAGATGAAAGTGTAAATACTTCAACAGTTTGTGATTATACTGATCTTAATACTCATACTGATGTAGCAAAAATTATGATTCAAGATAATAAGAGAATCATGAAAGAATATTCAAATCAAAGTCGCACTACGGTCATCAAGTTATCACAAACTAACTCGGAGTCACCCATTTCATCTTCATTGAAAAAAACTCTTATAAATGAAAAAACTGTGCAGATACAGGAATGTGCAGAATATAATGCAAATATAAGTACAAATATAAAAAATAAGTCATTACGTAGATCTAGTCGCGAAATTAATTGCAATGCGCAAAAAAATAAGGAAGGTGTACATGGCAAAATTTCAGAGTTGATGACGGATGAACAGAAGGAAACCATAGAGACATTCTATACAGTAGATATGTCCGTTGTAGACTCTGAAGAAGTTCTAAGAAATGTAACTGTAGTAGATAAGAAAAACATCCGATGCAATTTGTGCAACTTGATTTATCTTAGATTGGATAAGTGTCAGGTGCACGTTTGGGGACATCTTAAAATGAAACCGTATCGTTGCAAAGCATGCGATTTTGCAACGGTAACCGTTAGTAACGTGCGTTGTCACATAAGAAAAAGCCACTTAAAAATTAAACCATTTACATGCCATTTATGCGAAAAGCGATACGTGACTGCAGTTCTGTTGGAGGAACATATTAACACACATACTGGTGCTCGACCATTCAAATGTAAAGTGTGTGATTTTGCTAGTGCAAGTCGACAAGTGTTAAGTTATCACAAAACGACACACAAGCCTGTTAAGGATATAAGTTGTAAAGTTTGCGGTCGAGAATTTTATTCAAAGGGTCGCATGCGTGCGCATATGCTTGTTCATAATAAGGATCAAGTGGTCATGTGTAAATTATGTTCTGCATATTTGTCCAATGAAGAGGCTTTAGAATTGCACCACAAAAATATTCACATGCGAGATTATATTTGTAATATATGCGGTAAACACGTGAAATCGAGGAAAGCACTGCATACTCACCAAAATGTCCACGCTGCTGCTAAATACAAATGTACATTATGTGAAAATGTCTATAAAAGTAGCCACATTTTAAAAGAGCATTTGTTAAAACATCAGGGTATTAGAAAATATAAATGCGATGTATGTGAAAAATCTTTTGCTCAGCAATCTCACCTAGCAGCTCACATGGCTGTACACAGTAAAATAAGATTTTATTGCCCAGGCTGTCAGCGCCCATTTAATCGACATGATAATATGAAAATACATACTAAACGTTGTAAATTATTCTTAGCAAATCCTGAATTAAAAAATCTCTTAAGCCAGAGAGCAAAAAGCAAAGCAGCAAGCCAAACTGCAAAAGGTGTAAATATTTTGCATAAAAGGAATGACTGCAAAAATACTGATATTTTAATAACGACTGAAATATGTGAAAACAAGACTGATACTGATCTACATAGATCAAAAATAGCTGCTGATAATAGTGCACCTGACAAGAATAATGAGCAGTCAACAAGACATATTATACAAAATGAAAAATATTTGGTGCTTAAAGATATTGACACATTGTGTGGTACAGAGGATAATATTGATGGTACTTCAGAAACTGAAAGAGTTACTATTATTGAAAATGTTTTAAGACCAGATTCTTTCTAA
Protein Sequence
MDIQEKAVSVSFRCSSNSVKQDDGLPQCVCLRCLGTLEFLCDFYERCHLTQKELLEASQKTGDTIRVPDIRRENDSEADKENTLRHGEIKHKIKASTDYAKISRKESNRMNHEVKKENTKPRNCEFNKCLSVSNSNVTENNSQITVSCTLKRLVFQADTVHDQAKKSEYNNVDVPKNEKSLQESKVHIHAPKSISRGKLLEPPLIPEALNSIVDKFQEAKECEKEPSRLSTRRRRCIRKPYVDQVYKANCSLLKPRNRKKEKMYDNVEDINIRPKRHCLRAISTNSSIKNNIGVSVPELPNDILFDRVQIGENDAMSISSVQVQDNEATRSKAVSVIVKQEKSEDSCSEVLTSKKSLWNEDKEILCGPEKLKSPKTSALPNISPLPGDEADIHPDESVNTSTVCDYTDLNTHTDVAKIMIQDNKRIMKEYSNQSRTTVIKLSQTNSESPISSSLKKTLINEKTVQIQECAEYNANISTNIKNKSLRRSSREINCNAQKNKEGVHGKISELMTDEQKETIETFYTVDMSVVDSEEVLRNVTVVDKKNIRCNLCNLIYLRLDKCQVHVWGHLKMKPYRCKACDFATVTVSNVRCHIRKSHLKIKPFTCHLCEKRYVTAVLLEEHINTHTGARPFKCKVCDFASASRQVLSYHKTTHKPVKDISCKVCGREFYSKGRMRAHMLVHNKDQVVMCKLCSAYLSNEEALELHHKNIHMRDYICNICGKHVKSRKALHTHQNVHAAAKYKCTLCENVYKSSHILKEHLLKHQGIRKYKCDVCEKSFAQQSHLAAHMAVHSKIRFYCPGCQRPFNRHDNMKIHTKRCKLFLANPELKNLLSQRAKSKAASQTAKGVNILHKRNDCKNTDILITTEICENKTDTDLHRSKIAADNSAPDKNNEQSTRHIIQNEKYLVLKDIDTLCGTEDNIDGTSETERVTIIENVLRPDSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-