Tfem001573.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000029.1:60786-66409[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.014 1.2 9.8 1.4 1 22 171 192 171 192 0.95 2 22 0.033 3.1 8.6 0.5 2 21 200 219 199 220 0.94 3 22 0.34 31 5.4 4.0 1 23 232 255 232 255 0.92 4 22 0.00055 0.051 14.2 5.0 1 23 497 520 497 520 0.98 5 22 0.45 41 5.0 0.7 5 23 527 546 526 546 0.93 6 22 0.0054 0.49 11.1 3.3 2 23 553 574 553 574 0.96 7 22 1.5e-05 0.0014 19.1 0.6 1 21 807 827 807 828 0.96 8 22 0.00074 0.067 13.8 0.2 2 23 836 858 836 858 0.96 9 22 0.052 4.8 8.0 4.0 2 23 869 891 868 891 0.91 10 22 2.4 2.2e+02 2.8 0.2 2 19 915 932 914 933 0.86 11 22 0.028 2.6 8.8 1.1 1 23 942 965 942 965 0.93 12 22 0.032 2.9 8.6 3.0 1 22 976 997 976 999 0.89 13 22 0.055 5 7.9 0.0 2 19 1041 1058 1041 1060 0.94 14 22 0.45 41 5.0 7.3 1 23 1068 1091 1068 1091 0.97 15 22 0.029 2.7 8.8 0.9 1 23 1100 1123 1100 1123 0.94 16 22 0.0067 0.61 10.8 0.4 1 20 1177 1196 1177 1198 0.95 17 22 0.00081 0.074 13.7 1.9 1 23 1205 1227 1205 1227 0.97 18 22 0.00074 0.068 13.8 2.7 1 23 1237 1260 1237 1260 0.94 19 22 0.064 5.8 7.7 0.6 2 21 1380 1399 1379 1400 0.93 20 22 0.0069 0.63 10.7 0.6 1 23 1407 1429 1407 1429 0.97 21 22 2.1 1.9e+02 2.9 5.9 1 23 1442 1465 1442 1465 0.93 22 22 2.6 2.4e+02 2.6 0.0 2 23 1617 1639 1616 1639 0.87
Sequence Information
- Coding Sequence
- ATGGCACGTGTTCTTGTCTATGAAAGGTCCATAGATCCTGGGACTATCGATCCAGCATTCTATGAGAAGAATGGATTTAATGTAGATGACATCTTGGGAAGGATCAAGTCTGAACCTGTTACAGAAGAAGATAACATTGAAACATTTTCAAACCAAGAGGACAGTCTGGGTGTATCAACAACTTCTGTTAATCTAAATGATTACTTGCAAAATAAAGAAAATGAAAGTACATCATCTCGAAATTACGCTAATTCGGAAAATAACAAAGAAGAGAATTTATCAACCAGAAAGCGGAAAAGGAACAATTCTGAAAAAGTGAATTCTCCACAACATGAGCATCCAACGAAGCAAAGAAAACGTCTCAATGAAATTAGACCCAACAGTCTGAGTGATAATCCTGAATGCATGCCTACTGAGCGAGATGTGAGAGAAACAGAAAGACGCAACGTTTGTAAGTCTGTGTATAATATTGGTGAGTTGTATGTAAAAGGAAAAAGTGTCCGCCGCCCCCATACATGTAATGTGTGTTATCGGAGATATACAAAACCAAATGTGCTTAGAAATCACATTAAAAGGTTCGCAAAACGCCGTCCACTTAAATGCAGTTATTGTGGAATATATGCCAAAACCAGTGAAAAGCTTACTCATCATGTAAAAGACTGTTTGGTTGCGACAGGAAGACGCCCTTTCAGGTATACTTGTGATTTCTGTCAGCAAGGATTTAGCCATAAAAGAGTTGTCCAAATTCACATATTTCATAGCCATAGCGATGAAATGAACGCCAGTACATATTTGGTACAACCTGTGCACTGTAAAAACATGTCACCTTGTGATAAAATGCGCGCCGCGGAAAGTAATACATCCAAAGTGAACTGGAGTGACAATCTAAAATCAAACAGTGATACTCATAATAAAAAGTTGCGGCAACCAACATTACCGGAATTTCTCCGTCGTTCCCCAACTGTGAAACAAGAACAATGTAGTCCACCAAAAGGTTTGTCGCCAAACAAGTCGCAAAATATAACTTTTGATGAATTATCTGCAACTCGGCCATTTGTAAAAATACATATTAACACTGAAGCTATGAGGACTCTATTGGACAGTAATACACACAATGATAAAGAACATAAGGACCATTATAGTCTTCGTTCTACAAAAATCAATAATAGTCAGAGTTTAAATTCAACATGTACCTCAAAGAACGTGAAGGTAAAATGTTCATCTGAGTCAACAGGAATTTCTTCACTTCTATCGCGTTACAAATGTCAAGATTTTACCATTCTTCTTAAAAAATGTGACGTCGAGGAAAATGGTGAAGAAAACATGGCTGAAGAAATCAGCCGTGATTACGTAGATGATTGTGAAAGCGATGTAATATTAAAAGAAGTCGAAATTTGTTTAGAAAAGTTGCCAAATATTAACACCCAAATGGTTAAATCCGAACTGCCAGCAAATAATGTAGATAATATAACAGATGCGGATGCATATTATAAGTGCAAATTTTGTAGTAAAGTGTTCTCTTCGAAGAAAGAGAAAAGAGAGCATAAGAGAACATCTCACACTTTATATATGTCAAGTTTGTGCAGAGCTCATTTCAAATCAAAAGATGGACTAATTGTACATTATCTACGCCGCCATTCTTTTTTTAAAGATCCAAAATGTTGCGTATGTCACGAAGTATTTGAAAGACGCATGTCACTTATAAAACATTTGGAACTGCATTGCATAAGAGTTTATCGATTGGCTGATGAAATGTTAAAAGGATTTAATCGTAGCACCTGTACACATTGTCGTGGCTGTGGTGCCAATTCGTGTCTAAAGCAATTTGAAAAATTTCAACAATTGCTAAGAAAAAGAATTGGTCTTGATTCTAATCTTGAGAGTAATGATCCTTGTATTACCTCCTCAAACGAAGAGATCAACGAAGCGCAACAAAATTTGGTATTGCAAGACACAACGGATATGGGCGCACCTGTTACTACCAGACAAGATACCAGTACGACTACGCAGGATGCCAATACAACTACACAGAATGCTAATACGACTAGCCAGGATACTAATACAATTACCGGGGATACTAATACAACTACACAGGATACTTATACGACTACACAGGATGCTGATACAACTCAGCCGTTACTGGGTAAATTGCCCTCCAGCTCTCAGTGCGAAGAGAATGCAGTCTCACTTATGGAAAATGCTGTTCCTGAAAAGTCCAATGACGTACAGGCATTTAGGAAACAGTCATCATCTCCTACACAGGAACGAAGTATATCTGAAGGCTCAGATTTGGAAGCACGCCTTCCTTTAAATGTCATTTTAACAGAGGGGATTAGTTCATATGTTCCTACCTCGGAAGGGCCTGTATTGGCGCAACGTAGTTCATTCAATCAGCAATTAAACAAAAGCAAGTTGAAGTATCCGTGCTCCGTATGCGGCAAGAGATTTCAAACTTTCGATAATCTTTCGCGTCACTTGCGATACTTCTCAACATCTGCGAGCGAAGTGTGCGAACTGTGTAATACTGCGTTTGGCACGAGTAGACTGCTAAAAGAGCATATGAGTAGAGCACACGTACCCGCTATCACGCAAACATACACACTTCACTGTAGATACTGCAATCAGGGATTCTACAAAAAAGGTAATCTCAAAATGCACGAGTTACATCTGCACATCTCAGTAGTAAACGTGAACTCTATGACCAGCGCACAATTACCGGAGCAGGGCTGGAGTTTTGACTTGGTATGCAGCGTGTGTCACTTGGTTTTCGGAAATTATGACCGATTCGTTGAGCATAATGTTTACTACTACAAAGGTCATGTTTATCCATGTGCTTTTTGCGATCAAACCTTCAACGGTATGTACATGTTAAATCATCACAACAAATTGGCACACTATGCAGAGGATATGCGAAAAGAATATACTTTTATTTGTGATATTTGCAACGAGGGCTTCAAGCATGAAACTCATTATCTTGCGCACAAAGTACACGTACACTCGTGCGAACCTGGGGAGAGCCCTGCTGTTTGGAACGTTAGCGAGGAGCAAATTACTCCATACAACATCCACATGGCCAATCAGGATAACTCGACTTTTAATTTCTTATACGCGAATACGCGCGTCTGTGATATCTGCAAGCTAGACTTTCCGACAGCGGCCGAATTGACTGTACACAAAGTAGAATATTCTAACGATGGAGAGTTCCAGTGCTACGAGTGTCACAGAAAGTGCCACACGTTGCAAGCTCTAGCTACTCATCGTAGGTTGAATCATCTAGAAACTAGTGTCGACAGTGACTATAAGTGTCCCACGTGTAAGGAGATTCTTATAAGCAGCGTTTCACTCATGAGCCACGAACAACATTTTCATAACAGTGTCAAGCAACGATTAAGTACGCGCATCCGCGACTTGTGGAATATGGACTCCAGTAATACATCCGTAAATTCAACTCTGCAGAATACATCTATAGATTTAAGTAGGTGTGGAAAGGCACGCAGCGATACGTCCATTGAGAATGGCCAAAAAGATTTTTCTTGTCAGACTTGTGGCATGTCGTTTTTAACGCAACACGATTTGAAGGATCATTTGGCTGAGTATGCCAATATAGGAGAGCACGTATGCCAACAATGTGGAAAGAAGTTCGAAGAGTTAATTTACTTGGAGAAGCACAGGCTCAAGCATTCCAGAATGAATGGAGCAACTGCCGACCATCATTGTCCTATTTGCAAAGAAGAATTTTCAACAGCGAAGAACGTCACAGCCCATATTCTACACATGCATAGTTGTCAACGTCTCGTGAACCTTGCAATTGCGCCCAGAAAATCTGCGGAAAGTAGCGGTGTTGAGAAAAGTCCACGGATTCCATCGTCTATTAATAACATCTCCGATAAAAGTCAATCTGTCGTTGATATGCTTGATAGCACTTCTATAGTAAATCTTGTTGATACCGAGGGGAATGAAGATCAGGAGAAAACTCTCGATGGAAGAGACAAGTCACCTAATCCTAAAACAATTCAACCAATTGTGGAAACAGATGATGCTCAACAATCAGAAACCATGATGATCATCTGCAGTTCCAGTTTATCGGAAAAATCAAATGATTCTCTCACTACTTCCACTCCCATTTCGAGAAAGTTAAGATGTGAAATTTGTCGTTTAAAATTTCAAAATTTAGATAGTCTTGAATACCATAAGAAACGTTATCGCGACGTACAAAGCTACGTCTGCAATATATGTGATAAACAAATGCCGCGGAATAAGGATTTCCGGATTCATTATGGAAAACATATGGCTGCCTGTCCGGAGCTATTTAAAAATATGAAATATGAGTGTTTTTATTGCAAAGAGAAATTTTTTACTTCAGCTGCTTGCAGGTCTCATATGTATCACGTTCACGATTTTCCAAATCGCAAAGGCATACTGGAGCAACTTTTACCGAAAGACAAATCTTTTGTCGGCTCGATTGAAGATGAAAACAAGATTGATCAAGTAATTGACATCGGCGACAACACGGATTCGGAGAATGATACAACCGATCCATTAGCAATAGATGAAATAGATTTGGAAACAGAAAGTGCCGAGATAACGATGCATAATAATCAGTTGGCTTCCTCAGAAAATGCCGCCTCGACATCTAATTGGGGGAAGCTTGAGAAAAGTGTAGACAAGAAAAGTAACGAAGGGGATAATACTAAAATGTCGCTGAAAGTTAAATGTCCTATATGTTTATCTGAATACCAATCATTAAGCCATCTTAAGTTCCACTTTAAAGAAGTTCATTCCAATTTGTCGAAGAAATGCTCTAAGGAGACACCGGACGGTTGGTCAGCAACGACCAACGACATTATTCAGTGTTTAATTTGTAATGCTGTCTTTCTCGACGAAATCCTTCTTGCCCGACATGTGGAAGATGTACATGAGCCCCATTTGGGCGATGCACATGCTAAAAACTCTGAAACTACACGGAGAGTACATAAATCTGATAGCATAGGACCTAGTGAGGATGCGGACGCGCCATGCGTAATTTGGGAAAAAAGCTTACCATCTACCCCCGAAACTATCACGATTCCAGATGATGATTCAGATACGTCTACGGTTATCGTTGAACCCAATGATGCAGATGACGTATTGATAATTCAACAGCCTGAATCATGA
- Protein Sequence
- MARVLVYERSIDPGTIDPAFYEKNGFNVDDILGRIKSEPVTEEDNIETFSNQEDSLGVSTTSVNLNDYLQNKENESTSSRNYANSENNKEENLSTRKRKRNNSEKVNSPQHEHPTKQRKRLNEIRPNSLSDNPECMPTERDVRETERRNVCKSVYNIGELYVKGKSVRRPHTCNVCYRRYTKPNVLRNHIKRFAKRRPLKCSYCGIYAKTSEKLTHHVKDCLVATGRRPFRYTCDFCQQGFSHKRVVQIHIFHSHSDEMNASTYLVQPVHCKNMSPCDKMRAAESNTSKVNWSDNLKSNSDTHNKKLRQPTLPEFLRRSPTVKQEQCSPPKGLSPNKSQNITFDELSATRPFVKIHINTEAMRTLLDSNTHNDKEHKDHYSLRSTKINNSQSLNSTCTSKNVKVKCSSESTGISSLLSRYKCQDFTILLKKCDVEENGEENMAEEISRDYVDDCESDVILKEVEICLEKLPNINTQMVKSELPANNVDNITDADAYYKCKFCSKVFSSKKEKREHKRTSHTLYMSSLCRAHFKSKDGLIVHYLRRHSFFKDPKCCVCHEVFERRMSLIKHLELHCIRVYRLADEMLKGFNRSTCTHCRGCGANSCLKQFEKFQQLLRKRIGLDSNLESNDPCITSSNEEINEAQQNLVLQDTTDMGAPVTTRQDTSTTTQDANTTTQNANTTSQDTNTITGDTNTTTQDTYTTTQDADTTQPLLGKLPSSSQCEENAVSLMENAVPEKSNDVQAFRKQSSSPTQERSISEGSDLEARLPLNVILTEGISSYVPTSEGPVLAQRSSFNQQLNKSKLKYPCSVCGKRFQTFDNLSRHLRYFSTSASEVCELCNTAFGTSRLLKEHMSRAHVPAITQTYTLHCRYCNQGFYKKGNLKMHELHLHISVVNVNSMTSAQLPEQGWSFDLVCSVCHLVFGNYDRFVEHNVYYYKGHVYPCAFCDQTFNGMYMLNHHNKLAHYAEDMRKEYTFICDICNEGFKHETHYLAHKVHVHSCEPGESPAVWNVSEEQITPYNIHMANQDNSTFNFLYANTRVCDICKLDFPTAAELTVHKVEYSNDGEFQCYECHRKCHTLQALATHRRLNHLETSVDSDYKCPTCKEILISSVSLMSHEQHFHNSVKQRLSTRIRDLWNMDSSNTSVNSTLQNTSIDLSRCGKARSDTSIENGQKDFSCQTCGMSFLTQHDLKDHLAEYANIGEHVCQQCGKKFEELIYLEKHRLKHSRMNGATADHHCPICKEEFSTAKNVTAHILHMHSCQRLVNLAIAPRKSAESSGVEKSPRIPSSINNISDKSQSVVDMLDSTSIVNLVDTEGNEDQEKTLDGRDKSPNPKTIQPIVETDDAQQSETMMIICSSSLSEKSNDSLTTSTPISRKLRCEICRLKFQNLDSLEYHKKRYRDVQSYVCNICDKQMPRNKDFRIHYGKHMAACPELFKNMKYECFYCKEKFFTSAACRSHMYHVHDFPNRKGILEQLLPKDKSFVGSIEDENKIDQVIDIGDNTDSENDTTDPLAIDEIDLETESAEITMHNNQLASSENAASTSNWGKLEKSVDKKSNEGDNTKMSLKVKCPICLSEYQSLSHLKFHFKEVHSNLSKKCSKETPDGWSATTNDIIQCLICNAVFLDEILLARHVEDVHEPHLGDAHAKNSETTRRVHKSDSIGPSEDADAPCVIWEKSLPSTPETITIPDDDSDTSTVIVEPNDADDVLIIQQPES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -