Tfem006339.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000141.1:494941-497810[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.5 6.8e+02 1.2 0.1 1 8 361 368 361 383 0.80 2 11 2.4e-06 0.00022 21.6 2.3 2 23 451 472 450 472 0.97 3 11 2.8e-05 0.0026 18.2 0.4 1 23 478 500 478 500 0.98 4 11 0.00062 0.057 14.0 2.3 1 23 506 528 506 528 0.98 5 11 6.8e-06 0.00062 20.2 1.5 1 23 534 556 534 556 0.98 6 11 0.00027 0.025 15.1 1.3 1 23 562 584 562 584 0.98 7 11 5.1e-07 4.7e-05 23.7 0.5 1 23 592 614 592 614 0.98 8 11 0.0029 0.27 11.9 0.2 1 23 620 642 620 642 0.94 9 11 1.5e-05 0.0013 19.1 2.2 1 23 648 670 648 670 0.98 10 11 1.1e-05 0.00096 19.6 0.5 1 23 676 698 676 698 0.98 11 11 0.0098 0.89 10.3 4.2 1 23 704 726 704 727 0.95
Sequence Information
- Coding Sequence
- atggctgtcgtcgaggagtttgagtacctctgtcgcctttgcgcgaccaagactggcattctaatgggcttgcctatcttcgaggccggtgatcaaacgcgaagcatagacaaaaagatcgctgcgtgcttacccgtccagGTTTCAATGACCGATCAACTTCCTAAGGTAGTGTGCGAAGAATGTGCCTATAAGTTAGACCAACTATTTGATTTTCGAGAAAAATGTATGCACACCGAAGGCATGTTTATGGCTATGTTAAAAGAAATTTGTAAGGATGAGGTAGTACACATATCAGGACACGACTTGGAAGAGGTAGAAGAAATAAGTAGAATTCAAAGGAACATTGTTGATAGAATGCAAAATAATATCGAAGATGTCCAAAGTCACACGAGCGTAACTTCCCATGAAACAGGAGAATCTACTATACATACTATGCAAGTTATGGATGAAATGGACTTGGCAGGAGGCGAACAAGTTGTGACGCAAGAAGAAATAGGACCGCAAGATACTGACATCGAGGTCACAGGTATTGACTGTTTGGATGGTGACACAGTCAGAATGGTAGACGAACATATACGCGAGGTTTCCAATCATCAAATTGTAATGCATCTGGAAGGTGACATGACTGTAGTAGGAAACTTAACTGTAAGTGGGCACTTAAGTGAGCTAGGTATAAATTATGTAACTTCTATTAACCCCGAAGATCAGAATCGAGAACAAATAGTACATTATTGTGAAAATGTTAAATATGAGCCAGTACCGATAAAGCAAGAATATCAGAGACTACAAGAAAGACTGGCTACCGCAGATACTGCGCGTGCACTTGAAAATAATGTAGCACCTGATGGATTTTCACCATCTCAGACTGAAACTGGAAGTGAAATTGAAGAATCTTGTATAAGCGAGAACGAAAATCGTGTAAATATAGGATCCACTCATTCGTCTATTTTACCTTCAACGAGTCAAGTAAATACAGAAAGTTCAGAAATTATGGCTGAATATACAAAAAGAGCAAAACATACGCTACTGGAATCAACATTAAACAATCCAACTGTTGATGAAACTGGATCGCATTGGTATGTGTGTCCATTTTGTAATGAAGCAGCGCTAGAAACAAATAGTTTGGCCGCGCACTTTGAACAGCACTTCTGCTGTTGTTCTTGCGAATTATACTTTACGAGTGTTGAACTGTTAAATATGCACAAGGAACAGTGTGATGTATATAAAAGTAAAGTAATCGATAAAGAGAAACAAGTTGCTGAAACAGAACTAACAGTTACTCAGAGTAATGATAATCAAGGAGAACAAAAAAAACAACCTGCCGTCAGACAAAAGTGGACTCcgaaagtttgtacacaatgtggaaaacaatataggacaaactataaacttcaagaacatatgcgaaagcataccggagaaaaaccatttcaatgtatgacatgtgacaaagcatttcgtagtaagataggtcttgcacagcacacagcaacacacacaggtcaatttgactacaactgtgccacgtgtggaaaaggattccagtgcaagagctatcttaatgttcaccaaagagttcattcagatttaaagccttttccatgtaatacttgcgggcaaaattttaaaacaaaacagtctttgcttgatcaccaaaataggcatcttggcgtaaagccttatatgtgtgaaatttgcggtagaggatttataacaaagggattatgcaaaagccatcaaaaaatacattctggtatggataatcgacaatatccgtgcgttgtatgtaataaaatgttcgtcagtaaaagttaccttaacacacatttgcgtattcacactggggaaaaaccctatttatgtgaaatatgtggcaagggatttttaactcgtgttgagctcaaaattcattcaaccatgcacactggtgaaaagagctttaaatgtgagatgtgtgggaaagtgtttgctagacgtgcagcattacggtgtcatagaagatctcacacaggggaacgtccttatagatgtgatgtgtgtgggaaaacgtttacccaattcagcccaatggctattcatagaagactgcatactggagaacgaccatatgagtgtgatgcatgtggaaaagcatttatttcaaaatcaacaatgatgtgtcacagaaaaaaacatcatcttACAACAGCTCCTTTACAAAAGGAAGTTTTAACTCCTCGTGAAGACGTTGAAGTAAAAGACATTCTTTCAACAGAAATAGTGCTTAGAGAATCGCACGAAGGAATCCAAATTACTGCAGATTAA
- Protein Sequence
- MAVVEEFEYLCRLCATKTGILMGLPIFEAGDQTRSIDKKIAACLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCMHTEGMFMAMLKEICKDEVVHISGHDLEEVEEISRIQRNIVDRMQNNIEDVQSHTSVTSHETGESTIHTMQVMDEMDLAGGEQVVTQEEIGPQDTDIEVTGIDCLDGDTVRMVDEHIREVSNHQIVMHLEGDMTVVGNLTVSGHLSELGINYVTSINPEDQNREQIVHYCENVKYEPVPIKQEYQRLQERLATADTARALENNVAPDGFSPSQTETGSEIEESCISENENRVNIGSTHSSILPSTSQVNTESSEIMAEYTKRAKHTLLESTLNNPTVDETGSHWYVCPFCNEAALETNSLAAHFEQHFCCCSCELYFTSVELLNMHKEQCDVYKSKVIDKEKQVAETELTVTQSNDNQGEQKKQPAVRQKWTPKVCTQCGKQYRTNYKLQEHMRKHTGEKPFQCMTCDKAFRSKIGLAQHTATHTGQFDYNCATCGKGFQCKSYLNVHQRVHSDLKPFPCNTCGQNFKTKQSLLDHQNRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEICGKGFLTRVELKIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHRRLHTGERPYECDACGKAFISKSTMMCHRKKHHLTTAPLQKEVLTPREDVEVKDILSTEIVLRESHEGIQITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761134;
- 90% Identity
- -
- 80% Identity
- -