Tfem010482.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000289.1:125327-129995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.68 62 4.5 6.3 2 23 265 287 264 287 0.96 2 21 0.012 1.1 10.0 1.5 1 23 337 359 337 359 0.98 3 21 0.012 1.1 10.0 0.5 1 23 408 430 408 430 0.98 4 21 0.072 6.6 7.5 0.2 3 20 482 499 480 501 0.92 5 21 1.1 98 3.8 3.6 1 23 513 536 513 536 0.88 6 21 0.0018 0.17 12.6 0.4 1 23 541 563 541 563 0.97 7 21 0.00025 0.023 15.3 0.2 1 23 613 635 613 635 0.97 8 21 0.00069 0.063 13.9 0.1 1 23 641 663 641 663 0.97 9 21 2.8e-05 0.0026 18.2 0.2 3 23 709 730 709 730 0.92 10 21 0.0032 0.29 11.8 2.0 1 23 737 760 737 760 0.94 11 21 0.00045 0.041 14.5 1.1 2 22 768 788 767 790 0.88 12 21 0.046 4.2 8.1 0.1 2 23 798 819 797 819 0.87 13 21 0.38 35 5.2 0.1 2 20 888 906 887 906 0.95 14 21 0.00043 0.04 14.5 0.2 2 23 926 947 925 947 0.96 15 21 9.4e-05 0.0086 16.6 2.3 1 23 961 983 961 983 0.98 16 21 0.00023 0.021 15.4 3.5 1 23 1005 1028 1005 1028 0.93 17 21 0.019 1.7 9.4 2.9 2 23 1120 1142 1119 1142 0.93 18 21 0.0072 0.66 10.7 0.8 3 23 1172 1193 1171 1193 0.93 19 21 0.16 15 6.4 1.8 1 23 1199 1223 1199 1223 0.94 20 21 0.03 2.7 8.7 0.5 1 23 1228 1251 1228 1251 0.97 21 21 0.039 3.5 8.4 2.4 2 23 1281 1303 1281 1303 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTAGTGGAGTTGGAGAATGTGGAAACTGTGTGTAGACTGTGCCTCACGGTGGAAGATCCAAAATCGTCGATATTCAGTGTGCAAGAGTCCGCGGTGTCATTGGCTGCTAAAATACAAGCCTGTGTATCCGTTCAGGTGTCCCCTACAGATAGGTTATCTACGTTAATATGTGGAAGTTGTGTAAAAAGCATAAATCAATGGTACACCTACAGAGAATCATGCTTAAAGTCCCAAGACAAGCTGCAACAATGGTTGGCAAATCATTCGCACGCAACACCAACGGTTGTGACGATCAAGGATGAACCAGTAGATTTAGATTTTTACGAGGATAATATGGAAGTTTTATCCGAGAACACTGTTAATAATTCTGAACACCAGCCTGACATTCTTACGCCATCCGTACACAACGCTCAAACGGTAAGTGAAGATGGTGGAGAGCACTTACCTCATCCCGAGCAAGATGTACAGAAAGAGAAAGAACCTGTTATACCTGTTGACAATACGGAAAAGAAAGCTGATAAAGATGGGGAGCAACTCGATAAAGAGCCATGCACATTGCCTATTAAAGAAGAACCAGTAGACGATTACGATACCGATTGCACAATTGAAATAGAATCTGCGACTGGCAGTGAGTTGCTTTTAAGTCCTGTTACTTCGGGAAAGGAGGATGTTGTGATGGAAGCAGATTCAACGCAGAAATCGAACACAGCATCTTCGGCTAGCAAGAAAAAGTCCAGACGGGGGCCTCATACCCATTTCAGAGGTCCTCGTGTTTTCATACAAAAATGTACACATTGCCAAATTAACTTACATTCTAAGTATTCTTATTCTAAACACATGGAAAGATTCCACAGTGAGGATCTCCTGAACGATAGCTCTAAGTCAATATCCCAAGAAGAGGAAGAATTGATCGAAGATTTGGAAGACGAATTAGTCAGTATGGAAATTGATGCACCTCTGACGCAGGTTCAACAAAATATCATTAGTCAGTTAAAAACATTCGAGTGCTATTCCTGTCAACAGATGTTCACTGACCGAAGAACCACCCTTGCACACATTCGTCAACATATGCCAGACTTGAGGCCGTACACGTGTATAGCCTGCCTAACCGAATTTCCAGATCGATCGATGTACAAGTTACATTGCGAAGCATCTTTCGAATGTGCGATGAAGATCGCGCTAGTTGTACCTAAGCATGGAAGCGAAAAGTATTTTACATGCAATATGTGTCTACGCCCATTACCAAATCGGAAGGAATTACTCAGTCATTTGTCGAAGCACTCGGACAAGCAGTACGAGGAACTGATGGCGCCCACTCGGTCGCCTCCCAAATTGAAACCAATGGAACCTATACGCTCTACCAAGGAAAAATCGTTACAGGGACCAGTAGTGCCGAACCCTTACAAAAATGGCGATCCGGCGCACAATCACTTGTGCGACTTGTGTGGAATGATATACCGATACAAGCCCAACATGCTAAAGCATCGTGAGCTTTGCCTAAGACTATTACCGGAGGTCAGAACGTCTTACAAGTGCGTGCACTGCGGCATGACCTTCCTCGTATTCAATAAGTTTCACAGTCATCTGGCGACCGAGCACAAGAAAAAGGAATACGCGTGCGCGCAGTGCGGCCTCAAGTTCAAGCTACCCAGCGAATTTCTGGCTCATCACGAAAGCCATCGGGTCCCGGCGAACGGCGGGAGAAAATCATTAGGAGACGAGAGCGACAGTTCCAAGTCACCACACGGTATTCAGAGTCCATTGAACGATTGGAACACCTTCGAGGAGGAAGTGAATTTGAACCGAATGAGAATCAGCAGTCAGAAGTACAGCTGCGCACTCTGCGGCCAGGAGTTCCCCACGAGAGCGAAGCTGACCGAGCACAGAAATCTTCATTTAAAAGTAAAAATATATTCATGCGTGATTTGCCGTAGCATGTTCAGCAGCGCTGGCGCTTTGGAGATTCACATGAAGGATCATGGTATAGAGGATCCGAACGAACGCAACGCCAACAGTTCCTGCGTGGAGTATGCCAAGTTGGACGAAGACTCGGAGGACGTGAATTCGATGAACACGTCGACGATATCTGAGCCTGGCTCGCGCAACGTCACCGGGTGCGAGCCATGCGGCAAGATATTCTCCAACTACGCCAATCTGAGGCGACACATTCGGAACGTACATAAGACTGCCAAGGCTCGTTACACCTGCTCGGAATGCCCGCGCACCTTCAAGAGCAAGGAGGTGTGCAACCGTCACGTTCAGGTAGAGCACAAGTCGCCCAAACCGATGCTGCAGTGTCCACAGTGTCCAAAGTCCTTCGTCTTCCGTGCTAACTTGAATCTCCATTGTCAGAGCGCCCATGGTGCGTCCCAGGGCAAGCAGAGCTGCGACATCTGCGGCAAAGTCTTCCTCGAGGAGGCTTCACTTAAGATACACAAAGGCTGGCACAATCGTGCCAATTCACGATTGAACTCGAGATTCTCCACGAGCACCTCGGACAACAGAATCAGAATGTCCTCCTCGTCGTCCCCGGAGAAAGGAACCTCCGCGAATACTACGCCAACGACGAGCGCCGATCGGCCGGCACGCGCGAGAAAATCCTTTCCCAATTCTTCCGCGAAACCTCCAGTGGCTCAAACGCAGAAGAATCTGCAGTGCCAAGTGTGCGACGACAACTTCACCGAGGTGACCGAGCTAAGGAAGCACCTCTGGGACGTTCACTGCGCGCGGAATAAACCGGAGAAGAGCTTCTCGGGCGACGAGCTTCAATGTCAACTCTGCACAAACGTGTTCCCGGACCAAGAGACCCTCAAGCTTCACATGCAGTGGCACAAAGCCCATCCAATTCTCAGCGACATGCAGAAGCAGAGTTACCCCTGCGAGGTGTGCGGCAAGCACTACAGCTCACGGAAGGTACTCTACAGGCACCGTAGGCTACACAAAGCTACCACCGTTGCCTCGATAAAGTTCCAGTCCTTGGCGAGGAAGCCCCATGCCACCCAGTTCCTCTGCACGATCTGCCGCAAGGTGTTCTGCAGCAATCAATCCCTACAACGGCACAAGATGAACATTCACCGTGATCTTTATGCTCAGCGCGTGCATTATCAAGAGTCCAACTTGGCCGAGGAGGAAGAGGAGGAGGAAGAGGAAGAGGAGGAGGCGGAGGAGGAGAAAGACGAGCAGCAGGTTTCACCAGTTAATTCATCCTCTTCTGTTGCCAATGCCAGTCGCAGACCCTCGATCGAGGAGCCCAAGGCGAAGAGAGTGAAAATCGAAGCTGAAGATGGCTCCTTGAAGCCAGCGCTAGTCCCGAATCCAGTCGCCAGTGGCGAAAAGAAGAAACCGGTGATGTGTCATGTATGCAAGAAGCACTTCCCCAACATGAGCGTTCTCTACAAGCACAAGCAACTGGTTCACAAGCCACGCATGGGTAGGGCGACCACGAGGCCGGTCCAACCGGTCCTGGAGTGCCTGCCGATGGTGGGTAAGGACGGCAAAGTCGCTTGCAACGTCTGCTACAAGCAATTCTCAGGCTTGACCAATCTCCGACAGCATTTCTCGATCAAGCACAGAAAGAAATCGAATTTCGCCTGCCACATCGACGGTTGCAACACCACCTGCGCTACGCCGCGCCGACTCAAGAGCCACGAGATTCAGCACAGTAGCATGATATACAGCTGCAACCTATGCGATCGTCACGTGTTCAGTAGGGGCGCTATGAGCGAGCATATGGTGACCGTTCACAACACTTCCTACGACGCGGCAACCAACAAGTCCTTTCACAGGGAGACCGATCTACGCTTCTACGAGGTGGAAGGCGCGGTGAACGCGACCTGTCCCCACTGCAAGATCAAGTATCCAAACAACAAGGCGATGAAAATCCATTACTTCAAGTTCCACGACGCTCCGGAGTCGAAGTGGCCGGCTGGTAGTTCCTCTTAG
- Protein Sequence
- MDEVVELENVETVCRLCLTVEDPKSSIFSVQESAVSLAAKIQACVSVQVSPTDRLSTLICGSCVKSINQWYTYRESCLKSQDKLQQWLANHSHATPTVVTIKDEPVDLDFYEDNMEVLSENTVNNSEHQPDILTPSVHNAQTVSEDGGEHLPHPEQDVQKEKEPVIPVDNTEKKADKDGEQLDKEPCTLPIKEEPVDDYDTDCTIEIESATGSELLLSPVTSGKEDVVMEADSTQKSNTASSASKKKSRRGPHTHFRGPRVFIQKCTHCQINLHSKYSYSKHMERFHSEDLLNDSSKSISQEEEELIEDLEDELVSMEIDAPLTQVQQNIISQLKTFECYSCQQMFTDRRTTLAHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCEASFECAMKIALVVPKHGSEKYFTCNMCLRPLPNRKELLSHLSKHSDKQYEELMAPTRSPPKLKPMEPIRSTKEKSLQGPVVPNPYKNGDPAHNHLCDLCGMIYRYKPNMLKHRELCLRLLPEVRTSYKCVHCGMTFLVFNKFHSHLATEHKKKEYACAQCGLKFKLPSEFLAHHESHRVPANGGRKSLGDESDSSKSPHGIQSPLNDWNTFEEEVNLNRMRISSQKYSCALCGQEFPTRAKLTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYAKLDEDSEDVNSMNTSTISEPGSRNVTGCEPCGKIFSNYANLRRHIRNVHKTAKARYTCSECPRTFKSKEVCNRHVQVEHKSPKPMLQCPQCPKSFVFRANLNLHCQSAHGASQGKQSCDICGKVFLEEASLKIHKGWHNRANSRLNSRFSTSTSDNRIRMSSSSSPEKGTSANTTPTTSADRPARARKSFPNSSAKPPVAQTQKNLQCQVCDDNFTEVTELRKHLWDVHCARNKPEKSFSGDELQCQLCTNVFPDQETLKLHMQWHKAHPILSDMQKQSYPCEVCGKHYSSRKVLYRHRRLHKATTVASIKFQSLARKPHATQFLCTICRKVFCSNQSLQRHKMNIHRDLYAQRVHYQESNLAEEEEEEEEEEEEAEEEKDEQQVSPVNSSSSVANASRRPSIEEPKAKRVKIEAEDGSLKPALVPNPVASGEKKKPVMCHVCKKHFPNMSVLYKHKQLVHKPRMGRATTRPVQPVLECLPMVGKDGKVACNVCYKQFSGLTNLRQHFSIKHRKKSNFACHIDGCNTTCATPRRLKSHEIQHSSMIYSCNLCDRHVFSRGAMSEHMVTVHNTSYDAATNKSFHRETDLRFYEVEGAVNATCPHCKIKYPNNKAMKIHYFKFHDAPESKWPAGSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -