Tfem012765.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000456.1:64209-67034[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.2 2.9e+02 2.3 0.3 2 19 121 137 120 138 0.82 2 14 0.00043 0.039 14.5 1.7 2 20 147 165 146 168 0.94 3 14 0.0047 0.43 11.3 1.3 1 23 174 197 174 197 0.93 4 14 3.2e-06 0.00029 21.2 0.9 1 23 203 225 203 225 0.98 5 14 2.9e-05 0.0026 18.2 1.9 1 23 378 400 378 400 0.97 6 14 0.00031 0.028 15.0 0.3 2 21 410 429 409 430 0.93 7 14 0.0003 0.027 15.0 2.6 1 20 452 471 452 474 0.92 8 14 0.014 1.3 9.8 0.7 1 23 479 502 479 502 0.95 9 14 1.3e-06 0.00011 22.5 0.3 1 23 508 530 508 530 0.98 10 14 0.0021 0.19 12.4 6.3 1 23 537 559 537 559 0.98 11 14 0.00035 0.032 14.8 0.4 3 23 567 587 565 587 0.97 12 14 0.0004 0.037 14.6 0.2 1 23 593 616 593 616 0.96 13 14 0.64 59 4.5 0.1 1 23 630 652 630 652 0.92 14 14 0.0013 0.12 13.0 0.0 2 23 919 940 918 940 0.96
Sequence Information
- Coding Sequence
- ATGGAGACTCATGAGAGTGAACAGTATGTTACATTTCCTCTTTCGGGAGTGCACGATGCTTTACAAGAAAACATTATATCTCATGAAGAGATATGCGAACCAGTTGACGAATGTGTCCTTCAGGAGGGTCTAACAGATGTGGCTGTTAATGATGTTAACAGTACTATAACGGAGGCACAAGTAGCAGTTGAGATATTAGGGGATCGATCTGACGAAGAAAATGAGAATCAAGTTGTATACCCTATATACATTAAACAGGAAGAACAACAACAGTACACATCCGGTGATGACGAATCGATGGCTGTGGAAGCTCTTCGCCAGCTCGGAGGCATGTATCCTTGCTTCGAGGACAAAAAGATTAGCTGTCCAAATTGCGCAAATCTTTTCACGCAATCCGAATTAGCAAAGCATCATCCAACGTGTAATACCGCTAAGTTATCTTGTACAACATGCGGAGAAAGATTTGAAAGGAAAATGGACTTAAACAATCACATGGTCTGTCATCAAGTGGATCGGCCTCATGCATGCAGGACATGCGGTAATCTTTTTCGTTCTAAGATTAGTCTACAATCGCACATGCTTCAAGTACACCAAGTGGAAAGGCCACATAAATGTACTATTTGCGGTGCAGATTTTCAAAGGCCGTCTAGTCTGTCGAATCATATGAAAATTCACACGTATGTAGCTGGGCGTGCTATTATGCAATCGCAAGGAATAAATATAGCATCGGTGGATTCATTTAGGAAGTGGCCTGAAAATAATATCTCCGAGTCACCTAATACTTCTGTACCATCTTCATCGGTCCAAACGATACAAAATTATGATGTGTGTCAAGTTCACTGGACAGTTCCGTCATATAATTTTTCTAGTGACCAATCGTCCGTTAATGCCATGTCCAACCCACAAGAAAAACTCGATACATTACAAGAATTTACAGTAATGCCTAATGGGGAAATAGCACAATTTGAATATACTCAACAGAATAATATCAGTAATCAAGTGAATCAACAGTACAATTTATCACTTAATTCATTTAACAATCCCGATGGAATGGTAAAAGTTGAAACGCTCTCTTACAACAGTGAAAATAGGCGAAATTATCCTGAGAATGAAGCAAATAATACTAAACAACATACGTGTACTCACTGTGGCGTTAGCTTTACGCGTGCAACAGCGTTAGTATCTCATGAAAAAATCCATGCTTCCAAAAATTGGAGCATGCCAATTGAATGCGAGTATTGCGATAAACAATTTCAAGATGCTAATCATCTGGCAACGCATCAAACAACCTGTGCAAAAAAAATGATGCAAAATAATATTGAACAAGGTGTACCTAATAGTAAGTGGGGTAAACATGCGTGCTCTGAATGTGGGAAGAAGTTCACTACTAAACAGAAAATGTTCCGCCACCAATGGATTCACAGAAAAAAGACACATTCTTGTGAAGTATGTGGTTCGCAATTTGAAAAGCAGAATCAGTTAGACGAACATAGATTATCGGCACATCCCGGTGACTCTCCATTTACTTGTACGGAATGTGGAAAGAGCTTTGTATCCCGCCAAGGTCTTTGGGAACATGGAAGAACTCATGCTGGAAGTCCAGCACATTTTCATTGTGATACTTGCTCAAAAACCTTTTCCTCCCGTCAAGGATACTTGATTCATCATAGAACGCATACAGGAGAACGACCATATGGCTGTAAATTTTGTTGGAAGGCTTTTAGAGATGGCGGAACTCTGAGAAAACACGAACGTATACATACAGGAGAGCGTCCACATGTTTGTCCACTATGTTCAAGAGCATTTAATCAAAAGGTAGTTCTTCGTGAACATGTTAGATGGGTTCATGCTGCAGGGAAAAATGAAACGGAAGTAACCGGCCCACCTTTTCCTTGTCCATTGTGTGGTGCTCTAAATCAAGATCGCGATGAATTATGTGCACATATAGTTAAACATTCTGATCAGATGATAGCAGAAGCCAAAGCAAAAACTAATAATAATGCTCCTAAAACTAAACCGGGGAAAAAAAAATCAAAGGGATCTGCTGGTTCTAATTCTCCAGGCAAATCAAATACCAGTCGTCGTTCGCTTCCTAAAGTAGAACAAAATGCAGCTTTATTATCGATAACTGAATCTTTAGATAAAACTGATAATCTGCAAATTGTGAACAATAAACAGAATAATGCATTCCTTGTAGTCACAGCAGAAAAACGAAGTGACGGATATATTGCAATATCAGAATTAAAACATAATAATGTCAGGTTGATAGTCGAAGGTAAACAAGGTGAGAGTATACATGTCTCACAACCTAATCATGGTCGCAGGGAAACTGTTAATTTGATCACTATGGAAAAGCATGAAGACGGAACCCATATAATACCTGCTGATTCAGAAGGCAGTTCTCTTCATACAATTGGAACCAATAGGCATAATGATATAACTACAATGCATTTAATACAGTCTTCTAAACAAAACAATACTTTACATTTAATATCAAAACAAAACGAGTCTCTGCCCGTTTTAGCTATACCTAATCCTCAGAATCATGAAAATTTTTCCAGTCAGATTGCACAAATCAGCAACACAGAAATGCCTATGAACATGGTTACTCATCATACAGCTAGGCAAAATCAAGGTATAAAAGAACACAATGAAACAGGTCAAGAATCTTTGATTCCGGAAGGAACGCCGCAAGCTGCTGTTATACAAGTTGTCCAATACCATCAGCATGAAAGTGACGATAGCGAAGAATTAGTGTGTGGTATTTGTGGGGAAGATTTTAATGACAAGAATGTGTTGATGGAACATGTGAAAATTCATATATAA
- Protein Sequence
- METHESEQYVTFPLSGVHDALQENIISHEEICEPVDECVLQEGLTDVAVNDVNSTITEAQVAVEILGDRSDEENENQVVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKISCPNCANLFTQSELAKHHPTCNTAKLSCTTCGERFERKMDLNNHMVCHQVDRPHACRTCGNLFRSKISLQSHMLQVHQVERPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQSQGINIASVDSFRKWPENNISESPNTSVPSSSVQTIQNYDVCQVHWTVPSYNFSSDQSSVNAMSNPQEKLDTLQEFTVMPNGEIAQFEYTQQNNISNQVNQQYNLSLNSFNNPDGMVKVETLSYNSENRRNYPENEANNTKQHTCTHCGVSFTRATALVSHEKIHASKNWSMPIECEYCDKQFQDANHLATHQTTCAKKMMQNNIEQGVPNSKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKTKPGKKKSKGSAGSNSPGKSNTSRRSLPKVEQNAALLSITESLDKTDNLQIVNNKQNNAFLVVTAEKRSDGYIAISELKHNNVRLIVEGKQGESIHVSQPNHGRRETVNLITMEKHEDGTHIIPADSEGSSLHTIGTNRHNDITTMHLIQSSKQNNTLHLISKQNESLPVLAIPNPQNHENFSSQIAQISNTEMPMNMVTHHTARQNQGIKEHNETGQESLIPEGTPQAAVIQVVQYHQHESDDSEELVCGICGEDFNDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141985;
- 90% Identity
- -
- 80% Identity
- -