Tfem004613.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000094.1:837560-840407[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.14 12.8 1.7 1 23 392 414 392 414 0.98 2 13 0.022 2 9.2 6.3 1 23 419 441 419 441 0.97 3 13 0.00067 0.061 13.9 0.7 2 23 448 469 448 469 0.98 4 13 0.00037 0.034 14.7 2.0 3 23 478 498 477 499 0.95 5 13 0.0016 0.14 12.7 0.2 3 23 506 526 505 526 0.98 6 13 0.00012 0.011 16.3 6.4 1 23 532 554 532 554 0.97 7 13 1.8e-05 0.0016 18.9 4.1 1 23 560 582 560 582 0.98 8 13 3.1e-05 0.0028 18.1 0.1 1 23 588 610 588 610 0.97 9 13 0.0076 0.7 10.6 0.5 2 23 626 647 625 647 0.97 10 13 5.7e-05 0.0052 17.3 0.5 1 19 654 672 654 676 0.95 11 13 0.023 2.1 9.1 1.1 3 23 684 705 682 705 0.90 12 13 1.1e-05 0.00098 19.6 3.0 1 23 711 733 711 733 0.98 13 13 1.1e-06 0.0001 22.7 0.0 1 23 739 761 739 761 0.98
Sequence Information
- Coding Sequence
- ATGGTACAAAGACGTTGCGCTGCAAAGACATGCTTTAATACCACGAATGGATCACCCAACATTAAATTCTTCACATTCCCTCAAACAGATTTCTCGATAAGAGCATGGGCTGACGCGTGCGGCAGACCAGAATTAATAAAGAAGAGTAAGGAAAGTCTGAAGCGTTATGTTTTGTGCGCCGAACATTTTGAGGATTATTGGTTCGTCGATCCTGAGACAAAGACGACGTTCGTCAAGACCTACGTACCTATTCCTACGTTATTTAAGAATAATTTGAAAGAGTACGTGAAGAGGCATACGAATTTAACAGGAACGAACAAAAGTCTTAAGGACAACGTCGTGAAGGATGTTCCGTTGATCGAACAGCTCGTAAGTCCAAAGGTAGCGCGGAGGAAAGCGAAGTCGTCGGATAAAGGATGCAATTCGTTCGATATCGATAAGGCATTTAAAGACAGGATAGATAATCCAAGGACCACGCTTATGAAACCGTACAAAAATGATAGTACGTCGTCGAATATGGAAAGAAGTTGTCGCCTGTGCGCGAACTTATTTCCAGCGAAATCTCTATCGTCGATTTACGATGATAATTTGGAAGAGAAACTTAATATGATTTTACCCCTTCAGTTCGAAGTCTATGAGGATGACGGTTTGCCTAAAGACATTTGTTTTCAATGTGTAAGAAAAGTTACTATATGTTATAACATCATACATCAATTTCTCAGTGCTTATGACAAGTTAAGAAAGCCAACGGCAGATTATGAACAAAGCAACGATATCCTAATACCGACGTTTTCATCACCGACGGCTTTATTGGTTTCAGAGTCAAAATGTATGCAGAATGGATTCTATGGCGATGAATTGGACGAAGAGAAGAACGCCATACTGGTGGAAGCGCATAACTGTTCCGACAATAATGAATCGGACCCCGACGATACAGGCGGCATGAAGAATGACTGTCGGGTCACTTCGTCGGTTGTATTTCAACCTGTGAAACAAAATGATAGTATTAGCGAGAGCACAAACTCGTCTACTTATTTAGTTGATCTAGACGGAAATGTAGTCAAAGAGACTTTCGTAAGTAATCTCAGCGCGTGTATAGACCTCAACACGGGGAAAACTCCAGAAACAATCTTTTTAAAAAAGAATTGTAGTAAGAGAAAGATTGTCAAGAAATACAAATGTTCAGATTGTACTTCCGATTTTATTACAAGAAAGGCATATCGCACGCACTTGAAATGGCACATGCCTGGAAGTTACATGTGTAAATATTGTGGTAAATGCTTCTTATCGGAATGTTCATTGGTGACACATAAAAAATTGCACGTTCATGAAACACCGCGCCAATGTAATATTTGTGGCGAATTGTTCATTTTTGCGAATAGTTTCAGACGGCATAAGAAGATCCATATTAACGACAATTGTTTGAAAATATGTAATACGTGCGACAAAGTATTTGCTTCCGAGGAAAGATTAAGAACGCACGAAAAGAAGCATCATCAACCGCACAGTGTTTTGTGCACCTTGTGCGGAAAAACATTGGCATCCTTGCAAGGTCTGAAGATACACTTGACGACTCACACGGGTGAGCGCTCTTTTTCGTGTAGAATGTGCTCCAAGACTTTTAAAACAAGATCTCAGCTATGTCGACACAATGATACGCATAGAAAGGATCGAATATTCGAATGTGCTCATTGTCCTAAAAAGTTTCGCGTAAAGGCGTTATTAAGGCAACACATGTGCTCACATTCCGGTATGAAACCGTATGTCTGCGATATATGTGGTGCCAGCTACAATAGGCGTGGCAATTTGGGACAGCACAGAAAAGCGCACTTTGATTTACAAAATGGAAAGCCTTTAGCGAACGAAGAAGTTATTAGATGTAATATCTGCAGGAAAAAAGTTAAATCGCTCTTGTTGTTGCAGTATCATATTGCAAAGCATAACGGAGAAAAGAAAGCTTATAAATGTAGCATATGCGATAAACGCTTCTCAACGGGTGCTCAATTGAAGGTTCACGATCTGCAACATACTGGGGAGAGACCGCATATTTGCATCGTATGCAACAAAGGATTTCGAACAGAAGCGACGATGAAACAGCATTATTTATCGCTTCATACGGATGAATATCCTCACGAATGTCCATTCTGCGACAGAAAATTTAAGCGCCTGCAATCGTTAATTGTCCATAAGAGAACTCATACTGGAGAACGACCGTATCCTTGCCCAATATGTGGTCGCGCATTCGCACAAAAAGGTGATATGATGAAGCATACAAATATTCACACGCAAGATAAAAAATATGCAAGACAGAGAGCTAACAATATTCAAAATAAAACTGCGTCGGAGCAAATGACAATTCTTACGGTACACGATAGCGAGGTACCGAACGAATATTTTATTAGAGTATCCGACATTGAATTAACATAG
- Protein Sequence
- MVQRRCAAKTCFNTTNGSPNIKFFTFPQTDFSIRAWADACGRPELIKKSKESLKRYVLCAEHFEDYWFVDPETKTTFVKTYVPIPTLFKNNLKEYVKRHTNLTGTNKSLKDNVVKDVPLIEQLVSPKVARRKAKSSDKGCNSFDIDKAFKDRIDNPRTTLMKPYKNDSTSSNMERSCRLCANLFPAKSLSSIYDDNLEEKLNMILPLQFEVYEDDGLPKDICFQCVRKVTICYNIIHQFLSAYDKLRKPTADYEQSNDILIPTFSSPTALLVSESKCMQNGFYGDELDEEKNAILVEAHNCSDNNESDPDDTGGMKNDCRVTSSVVFQPVKQNDSISESTNSSTYLVDLDGNVVKETFVSNLSACIDLNTGKTPETIFLKKNCSKRKIVKKYKCSDCTSDFITRKAYRTHLKWHMPGSYMCKYCGKCFLSECSLVTHKKLHVHETPRQCNICGELFIFANSFRRHKKIHINDNCLKICNTCDKVFASEERLRTHEKKHHQPHSVLCTLCGKTLASLQGLKIHLTTHTGERSFSCRMCSKTFKTRSQLCRHNDTHRKDRIFECAHCPKKFRVKALLRQHMCSHSGMKPYVCDICGASYNRRGNLGQHRKAHFDLQNGKPLANEEVIRCNICRKKVKSLLLLQYHIAKHNGEKKAYKCSICDKRFSTGAQLKVHDLQHTGERPHICIVCNKGFRTEATMKQHYLSLHTDEYPHECPFCDRKFKRLQSLIVHKRTHTGERPYPCPICGRAFAQKGDMMKHTNIHTQDKKYARQRANNIQNKTASEQMTILTVHDSEVPNEYFIRVSDIELT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -