Tfem000867.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000013.1:399721-402060[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.8e-06 0.0009 19.7 1.2 1 23 296 318 296 318 0.97 2 12 0.00091 0.083 13.5 3.5 1 23 322 344 322 344 0.98 3 12 0.0014 0.13 12.9 5.4 1 23 349 371 349 371 0.96 4 12 1.7e-05 0.0016 18.9 2.7 1 23 423 445 423 445 0.98 5 12 0.00074 0.067 13.8 1.4 1 23 450 472 450 472 0.97 6 12 0.00027 0.024 15.2 2.3 1 23 521 543 521 543 0.98 7 12 9.3e-05 0.0085 16.6 0.9 2 23 551 572 550 572 0.97 8 12 9.2e-07 8.4e-05 22.9 2.1 1 23 582 604 582 604 0.96 9 12 0.00021 0.019 15.5 1.6 1 23 610 632 610 632 0.97 10 12 0.00015 0.013 16.0 0.7 1 23 638 660 638 660 0.98 11 12 4.4e-06 0.0004 20.8 2.0 1 23 666 688 666 688 0.96 12 12 7.9e-05 0.0072 16.9 0.3 1 22 694 715 694 715 0.96
Sequence Information
- Coding Sequence
- ATGAATTCAGGATATTTTGGATTACCACTTAATATGGATAGAGTATGCAGAATTTGTCTGACGGAAGGAACAAATTTGTCACCAATTTTTTGCACCGACCAAGAAGTAGATGATTTCTCCGGATTACCACAAAAAATACAGATCTGCGGATCCATTGACATCCATGAACAAGATGGATTACCTTCTTTGATCTGCGACGTTTGCATCTACAAAGCCAGTGTCGCTCACGAATTTCGACAGCAGTGCCAGCATTCGGATGCTAGGTTACGAATGTATTACAATAAACCTGCAAAGTGTAATGTTGCGGATTCCTATACACAGACGGAGCTTCAAACAAGGATAGTCTTAGTAAAAAAGCCTTCTGAGCCAGAGGAAAGTTATTTTACGAAAGAAGAAGATCAGGTGCCATCGGATTCTCAAGACTTTGTACAAGAAAGTGACTCGTATTCTAGAAGTGAAGCAAATCTTAGTGCTAGTCAGATTGATATACAAGATGAAAAGCTTTTCATGTGTGCTATTGGTTTTGAAGCCCCAAAAAGCATCGGCAAGACACCATGTTCGTCTAATGGTATTCATCAGACACATACTATTGAATCAATATCTGAACCGAATATCCAGGATTCATCCATCATTGCAAATATTCAATCGAAACCAAATGAACAACTTCCTGCTGAAAGAGAAATCGATGAAAATTGTAAAGAACAAGCCGAGAAATCTCTTGATGATACATCAAGTGATAATATTGACATAAAAGAGGCAGCACCACAAAAACGTAAATCATCAAGAAAAACAAAGTCTGTGCCTAATAAAATTTATAGCGAGGATGAAGCATGTGATAATTACTATGATTTAAGCAGTGATAGTCAAGATTCACAAGAATTAAAATTTAAATGTAAGATATGTTCTAAACGGTATGCAACGCAAAAGGGTTTAAAAAAGCATGCACTTGTACATGAAAAAAAACATAAATGTAATATATGTCTAAAGATGTTTTATAAAGAGGAAAATATGGAGAAACATAAAAAAATACATGCTTCTAAACCTCATGCTTGTCAATTATGTCACGCGTGCTTTTCAAAACCTCAGAGTTTGGTGCGGCATCTAAAATCCCACACTGAGAAAGTTAATAATATGATAAAACAAATAAATACGGATGAACAAAAAAATGATAAGGAGCCCAAGAAGGAATTAAAAAGTGAAGAGGATACGGATGATGAAAGTGGTACTATGAATGAAGCAGATGAATTTGAGAATGCACCAGAATTATATAAATGTGAAATTTGTGGTCAATATTGCTCCTCCCTAAAAAATCTAAAAAGGCACACTCTTGTGCATGGAGATAAAAAGTATTCCTGTACAGTATGTAAAAAATGGTTTTTCAGGCCTGATACTTTAAAAAAGCATGCAGAGAAACATGGTCATGGACTTCTAGATAACTTAGTAGATGATAATAAATTATTTGATTCCGATGACGATCCTTTCCCAGATACTACTAATAATGCACTCCCCGAAAGTGATAATGTTAAAAAGGAGGATAGCGACGAAGATGGGTCTGGAGAATACAAGTGCCAACATTGTGATAAAATTATGGCAACTAAAAAAGGCCTTCGACGTCATGTATCCATGCACAAGCCCAAAGCTGAACCAGTAACATGTGAAATTTGTAAAAAAGTTTGTGCTAGTCAGGCACGTTTAGCCCTTCACCAGAGGACACACAAACCtaaagaaaaagttccacgagaatatttgtgtcatatttgcagtaaagtgtatccaagtaattcttctttgacgtatcacatgagaactcacacaggagtaaaaccacatgtatgtaaaacatgtaatagtggatttacaacgactacaagcttggcaaatcatattcgtatacatacaggagataagccatttgtatgtcatgtttgtagtgcagcatttgctgttagctctgcattcaggcggcatttaacacgacatacaggcgaggccaattatctctgtaaaacatgcggtaaagcatttaaaaggcttagcacattaaaggaacacacgtatactcattcgggagaaaaaccatatgtgtgtaaaacatgtggtGCTGCATATAGCCATAGTGGTAGCTTATTTGCACACCAAAAACGCTGTCGTGCTCAATATGGGGAAATGGTTGTAGACGATCATCATCACACAGTGGCACATCACATTCATGTGAACAATGTACAATCTGCAGTAAGATCTCTTGCAGTGATAGGCCAAATGTTTTAA
- Protein Sequence
- MNSGYFGLPLNMDRVCRICLTEGTNLSPIFCTDQEVDDFSGLPQKIQICGSIDIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPAKCNVADSYTQTELQTRIVLVKKPSEPEESYFTKEEDQVPSDSQDFVQESDSYSRSEANLSASQIDIQDEKLFMCAIGFEAPKSIGKTPCSSNGIHQTHTIESISEPNIQDSSIIANIQSKPNEQLPAEREIDENCKEQAEKSLDDTSSDNIDIKEAAPQKRKSSRKTKSVPNKIYSEDEACDNYYDLSSDSQDSQELKFKCKICSKRYATQKGLKKHALVHEKKHKCNICLKMFYKEENMEKHKKIHASKPHACQLCHACFSKPQSLVRHLKSHTEKVNNMIKQINTDEQKNDKEPKKELKSEEDTDDESGTMNEADEFENAPELYKCEICGQYCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLFDSDDDPFPDTTNNALPESDNVKKEDSDEDGSGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLALHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVVDDHHHTVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01255866;
- 90% Identity
- -
- 80% Identity
- -