Tfem004600.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000094.1:423375-426497[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.49 45 4.9 0.8 3 19 350 366 349 368 0.95 2 17 0.00038 0.035 14.7 2.3 2 23 408 429 408 429 0.97 3 17 0.0086 0.78 10.4 0.7 3 23 438 459 437 459 0.95 4 17 0.058 5.3 7.8 5.7 2 23 473 495 472 495 0.94 5 17 0.00083 0.076 13.6 0.3 1 23 501 523 501 523 0.97 6 17 7e-06 0.00064 20.2 2.8 1 23 529 551 529 551 0.95 7 17 7.9e-05 0.0072 16.8 3.3 1 23 560 582 560 582 0.97 8 17 2.8e-05 0.0025 18.3 1.5 1 23 588 610 588 610 0.98 9 17 4.4e-06 0.0004 20.8 0.2 1 23 615 637 615 637 0.98 10 17 0.02 1.8 9.3 7.5 1 23 644 666 644 666 0.99 11 17 0.00017 0.015 15.8 0.4 2 23 686 707 685 707 0.97 12 17 0.00012 0.011 16.3 0.4 2 23 715 737 714 737 0.96 13 17 0.00043 0.039 14.5 0.6 1 23 743 765 743 765 0.96 14 17 0.0011 0.096 13.3 3.1 1 23 771 793 771 793 0.98 15 17 9.5e-07 8.7e-05 22.9 4.9 1 23 799 821 799 821 0.98 16 17 1.3e-06 0.00012 22.4 1.1 1 23 827 849 827 849 0.98 17 17 6.8e-06 0.00062 20.2 0.3 2 23 855 876 854 876 0.95
Sequence Information
- Coding Sequence
- ATGAGCATAGTATGCGCATCGACCGATTGCAAATATTCGTCCAAGGATTCGGACTCGTCGCAGGTCATATTTATTCATTTTCCAAATGACGATACGGCGAAGATATGGGCTCACAATTGCGGACGCGCAGATTTAATAATGAAATCCAACGAGGAGCTACACGCGAATTATTACATTTGTTCACATCACATCGAGGATCGATGTTACATACGCAAAGCTAATCCGATAATAATCGAGCAAGGCACTATTCCAACGTTGTTCGGCGTAGATTCGAAAGCGAAGAATCATTCGATCGGTATTTTCGATAGAGCCAAACAATCCGAATCTACAGATAACGCTGCGTTAACGTACTGCGACGCAAACGTCGAGATAGATCAGTACCAAGGGATCGGTATAAGACTCTCCAATCTGTGTAGAATATGCGGAGAGCCTTCGTCGGATGGCATAGACGTTTTCACGGTGAAAGGTATAGAATTGAGACTGAAAGACAAGATTAATCTGCATTTGCCTATATCCGTTAACATGGAGGACATAATGCCGCAGAAGATATGCATAGATTGCTGTAACAAATTGGAAATTGCGCACTCGCTGGTAACGACGTGCTTGAAGACCGATATGAGATTGAGGAGGTTCTTAGATATCGCGGGAGAACCAGAATACGACCGCAGATACAACGTACTAGTGGAAGAATGTTCCTTGGAGATTGTCGACGAGATGTGTATGGACGAGAGAGGTCAAAACGATACTTTATCTTTTCCTCCTGATAAAGCGGAGAATATAGTGATGGATCAAGACTTAACGGAATTGAAAGATTGTCCTGCGAGTACTGATATGCAAGTACAAATTACAGACGCGTCTTCCAGTTTGGAAACTAACGTCATCGAGAATATGAAGTTTCAGGAATTATCGAAGAATGATATTCACGCGGAACTGAGTAATTTAGTCGAGACTTATACCGAAATAGAGAATAACGACACTGACAATTTAATCGAATGCGATACAAACGTTTTGGACACTAATACCGAAAAGGAACATTACGAGATTTTATGTCTTCACTGCAAAGATTCGTTTAAGACGCGAGAGATGTTTGAGAATCACGAAATATTCTGCGACGCTGGCGAATCTCTTGAATTTCCCAAAATTAGAGACACTTCTTCCCTTAAGGACAATCATAAAAAATCTATTAAGAAGCAAACGACTCATATGCAAATAGTTATGAATACCTGCAGTACGTGTCAGCAGGTCTTTGATCGTAAAGAACAATTTGAGAAGCACAAAATGTCTCATTGTAAAATACTGCAACACGCGAATTGTCAAACTTGCGGCCAAATATTTGAATCTCGCCAAGATTTAGATATTCACGTAAATGTTTGTCACAATAAAATATGTGAAAATACTATTACGGACACTAGTAAAAAATGCGGTCACTGTCAAGCTGTATATTGCACTAGAAAGGAATTGTCGAATCACATATTGGAATGTCATAAAGGCCAATTGTTATTCCAATGTTTTGCGTGCGATAAAACCTACGAGAAATGGTCCAGCTTGGACGTTCATGAAGCTACTCACAGAATGGATAAACCTTTTTTGTGCGATCTATGCGGCAAAAGCTTTAAGCATTCCAACAATTTAAGAGGCCACAAAAGAATTCATTTGGACGAGTCGAAAAAGAAAAGACACGTCTGCGAATTATGCGGAAATGCTTTTAGATCGAGATTTCACCTAAGGGAACACATGAACCAACACGATGGAAATAAACCGTATTCCTGCGAGCAATGCGGCAAGGCCTTTTACAAGAGGATTCAATTGCGACAACATAAATTATCTCACGGATTAAATAGGTATGTTTGTCCGGTGTGCGGCGTTACTTTCAACCGTAGAGGAAACATGAGCACGCACGTCAAACGGCACAACAATGGAGATGGAGCATATACTTGCAGCGTTTGTACGCACAGATGTAAATCTATGAGCGAACTGAAAATGCACAGGAAAAAGCACACCGAGCAAGAGATCATAGAGAGTATCAGACAGAAATGCTCGGATAAAACCATCTGGCAGTGCAAGATATGCTCCAGAATATTCTCAAAGCGCGCAGTTCTTCAAAATCACGAGCGAATTCATGCAGGTGACAAGAACACCGTGGAATGTGACGAATGTGGAAAGAAATTGTCGAGCAAGAATTCCTTGATCTATCATAAAAGATCGATACACTCTAAGGAGAGGCCTCACATGTGTCAATACTGCGGCGAATCCTTCGTTTCCAAGGAGGCGCGTTTAATCCACGAAAGGATACACACGGGAGAGCGTCCTTACGTTTGCAAGGTTTGCAACATGCAGTACAGATGTTCCAGTAACCTCAGTCAGCACATGAAGATACACTCGGACATCAGACCTCACAAGTGTCACTACTGCAACAAAACTTTTACGCGTAAAGGAGCATTAAACGTACACGAGAGAATCCATACAGGAATTAAACCGTTTCCCTGCGACGTATGTGGCAGAACGTTCTCCCAAAAGAACGATATGCTTAAGCACACCAAGACCCACAGTGTGAAATCTCTCCAGTGCGAGCAGTGCAATGAGGTCTTCTCGACGAAGAAGGATTTATTAAAGCACATTGCGCTACACGATCAGAACGCAACGGTGATACAGGAGTACGTGGAAGTGGAACAGCAACTACAGCCTTACACCATAAACATATCTTGTTCGGTCGACTAA
- Protein Sequence
- MSIVCASTDCKYSSKDSDSSQVIFIHFPNDDTAKIWAHNCGRADLIMKSNEELHANYYICSHHIEDRCYIRKANPIIIEQGTIPTLFGVDSKAKNHSIGIFDRAKQSESTDNAALTYCDANVEIDQYQGIGIRLSNLCRICGEPSSDGIDVFTVKGIELRLKDKINLHLPISVNMEDIMPQKICIDCCNKLEIAHSLVTTCLKTDMRLRRFLDIAGEPEYDRRYNVLVEECSLEIVDEMCMDERGQNDTLSFPPDKAENIVMDQDLTELKDCPASTDMQVQITDASSSLETNVIENMKFQELSKNDIHAELSNLVETYTEIENNDTDNLIECDTNVLDTNTEKEHYEILCLHCKDSFKTREMFENHEIFCDAGESLEFPKIRDTSSLKDNHKKSIKKQTTHMQIVMNTCSTCQQVFDRKEQFEKHKMSHCKILQHANCQTCGQIFESRQDLDIHVNVCHNKICENTITDTSKKCGHCQAVYCTRKELSNHILECHKGQLLFQCFACDKTYEKWSSLDVHEATHRMDKPFLCDLCGKSFKHSNNLRGHKRIHLDESKKKRHVCELCGNAFRSRFHLREHMNQHDGNKPYSCEQCGKAFYKRIQLRQHKLSHGLNRYVCPVCGVTFNRRGNMSTHVKRHNNGDGAYTCSVCTHRCKSMSELKMHRKKHTEQEIIESIRQKCSDKTIWQCKICSRIFSKRAVLQNHERIHAGDKNTVECDECGKKLSSKNSLIYHKRSIHSKERPHMCQYCGESFVSKEARLIHERIHTGERPYVCKVCNMQYRCSSNLSQHMKIHSDIRPHKCHYCNKTFTRKGALNVHERIHTGIKPFPCDVCGRTFSQKNDMLKHTKTHSVKSLQCEQCNEVFSTKKDLLKHIALHDQNATVIQEYVEVEQQLQPYTINISCSVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -