Tfem008739.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000217.1:1509-5771[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.018 1.6 9.4 3.1 1 23 348 370 348 370 0.97 2 19 0.12 11 6.8 1.8 2 23 405 426 404 426 0.93 3 19 0.00073 0.067 13.8 2.2 1 23 500 522 500 522 0.97 4 19 0.55 50 4.7 0.7 2 23 526 547 525 547 0.96 5 19 1.3e-05 0.0012 19.3 2.1 2 23 602 623 601 623 0.97 6 19 0.026 2.4 8.9 7.3 1 23 628 650 628 650 0.96 7 19 0.00039 0.036 14.7 0.7 1 21 656 676 656 680 0.92 8 19 0.00018 0.016 15.8 3.2 2 23 752 773 751 773 0.95 9 19 0.00013 0.012 16.1 4.9 1 23 827 849 827 849 0.97 10 19 0.00026 0.024 15.2 0.7 1 20 854 873 854 875 0.94 11 19 0.0025 0.23 12.1 0.5 2 23 886 907 886 907 0.98 12 19 2.6e-05 0.0024 18.3 0.6 2 23 946 967 945 967 0.97 13 19 2.4e-05 0.0022 18.5 1.6 1 23 972 994 972 994 0.95 14 19 0.00013 0.012 16.1 2.9 1 23 1000 1022 1000 1022 0.98 15 19 4.2e-06 0.00039 20.8 0.4 1 23 1038 1060 1038 1060 0.95 16 19 3.5e-07 3.2e-05 24.3 0.6 1 23 1066 1088 1066 1088 0.99 17 19 3.8e-05 0.0034 17.9 0.2 1 23 1094 1116 1094 1116 0.97 18 19 0.00014 0.013 16.1 4.1 1 23 1122 1144 1122 1144 0.96 19 19 0.0098 0.9 10.3 0.4 1 20 1150 1169 1150 1171 0.89
Sequence Information
- Coding Sequence
- ATGGACGCTGTGGAAATAAATACGTCTGATCCACCACAAAATGAGAATGGTATCGTGACCACGGTAGAAATATGTCGTATCTGTTTACTCGGTAACCTCGTGATGCGGGATCTGTTCCTAGAAAATGAGGTTGCTTCGCTATCCGCGAAAGCCATGAGCTTCGCAAATGTTAAGATATTAATTGGAGATGGACTACCTACGCAAATATGCTGCATCTGCGCGGATAAATTGGAGTCCGCGTATGAATTTAAGTTGCAAGTCGAACAAGCGGACAATGTTCTCAGAGAGAGATATGATACATTGAATATCAAAGAGGAACTGTTCTTTAACGAAGTTGAAGTACACTTGGAAGTAGAAAGGAATGAGGGTATGGATGAACTACACGTCGGCGCCCATTATGAATCTAATGTTGAGGATGTTGCCGAGGAGTTGGAAAATGAAAAATCATCACTGTTAAAAGATCAGCTGGCGCTTTTACAAGTTGAGAAATTAGCCGAAGAAGAACGATTGGCAAAGGAGGGATGTGCAATGGATACGGTAATACAAGATATGAACAAAATGTCGGACGAAGATTTACAACAAAAAGTCGGCGTTAAAGACGAAGAATCTCTCACAACTATTATTCAGACATCGGAAAACTGTAAACCTTTGAAAGTAGATGGGACAATAGTTGGTGACACAATTGCCACGGATGAGCACGATTACATCTTACATCACGGATCTATCCTGCACAATGATGAAGTGCAGTTCTCAAATCAAGAATCTGGATTATGCGATGAAAGTAGGGGGCACTCAATGGATGTATTGACAGAAAGTACTGTGGCAGAGCAAACTGAAGATGAAGGAAATGTTTTAATACGACAAGTCCATGTACCAACGGAACAGGAGTTGCCTCAAAGCGAAGCAAGGAGGAGTAAGCGTAAATCAGCTCGACGTACATTTGTGGCAGAACGCGATTCCGATGAAGAAAACTACTTTGAAAACTTAAATCTAAGTTCTCGGCTTAAAAAAGTGCAAGTCGATAAGTCTGAAAAAATATACTTTATGTGTTACTTGTGCGATAAACAATTTCTATCAAAAAGTGTCTTAAAAGAGCATATGCATTCGCATGAAGAGGTGCGAACAGCATTGTCATTGAAGAGAAGTCCGGAGAAATCGCAAAAAAGCTCTAACTGTTCGACGAAGCTACCACCATCTGGTAAGAGAGCAAATAAATGTCCTCATTGTGGCAAAGAATACCTTTATGTAATTTCGTTTAGCAAGCATTTAAAGCAACACGAAAGAGAAAGAGAAGAGACAAAAGACCAGCGAATGCCCCTCGAAATTTCTTTCCACGAAGATGAACATAGTTTGGACTTTGAAGAATATGCTAATTCTCAGTACTTAGACATTGATTGTAAGAGGAGGACAAAGAGGGAAGATGACGTAAATAAAGATAGTGAGTCCCAATCGCAATCTGAAAAAGATGCACATAGACAGAAAAGACATACGAATACATACGTTTGTGAGAAGTGTTCGGAAAATTTTCACACTCGTCGAGATTTGAGGAAACATGCAATTTCACATATTAGCCTTAAGTGTAGCATATGCGCAGATACATATGATACAATAGAAAAGTTAAGAAATCATCGTACAAAACATGTTGTCGAAGGTGTATTAACAGAAGAAGATTTAGAAGAGGATGTAAAACATGTCATTGATAAAGAAATAAGTAACTCAGATGAAAATGATAAAGATGATGAAGATGATGTTCTCACGGAGGATACACACGATGACAGTGCATGGTCAGAAGCAAACACTCTTAAGTGTCCCAATTGTCCAATGATGTATTCCCATAAGAAATCCTTAAGTAGGCATATGGAGACACATTCAGGGACCAAGTATAACTGTAAAGTGTGTTGTCAACAATTTACTAGGAAAGATCATTTGCGAAGACACACGGAACAACATGGAAGAGTTAAGACGTATAAATGTACACAATGTAATAAAACATTTGGCAATGAGCTTACATTGCGCAATCATTTAATAGCTACAAATCACAAAACTTTTGTACATGGACAAGAATATGATCCAAATAAGCGTATTAAACGCGTCGCTGCAAAAGCAGCACAGAAAATTATTGACAAAATTAAAACTGAAGATGGGTTAGATGATTGTGACGATGATGATAATAATGATTTTCTCGAATTACATAATCATTATAGCCGTAGACGTGAGGTTATGCCAAAAAAATATAATTACAGAAAAGAATTAGAATGCGCAACGTGTAACAAAACATGTAGCTCTAAGCAATCTCTGACAAAACATATGGAACAGCATGTCAAAGATGAGAAGATAGAAAAATTGGAAAAATTAGAAAAATTAAGAAAAATTCCAGACAAAAAGGAGCATCAAACTTCTTGTACAGAAATTATAGATGACGACGATGCTGATGATAATTCTGACTTTGAAAGTGGTTTAGATTGGCCTATGGATAATCATGAATGTAATACTTGTAAAAAGAGGTACAGCACAAAAAAATCATTGTTGCGTCACCAGTTACTTCATGAAGAACCAAATTTTGAATGTGACATTTGTAATGTTAAGTTCTATCGTAAGGATAAGCTGAAAGCTCATTATGATAAATGCTCTGAAAAAAATCCCGATCAAGTTAGAAAGTGCAATATTTGTGGGGACATTTTTGAGAATAATGAAATGTTACGAGAGCACAGATCGAAACATGTAACCGAAGGAATTTTAACCGAAGAAGACTTAAGAGATATTGAACCCTCCTCCGAGGAAAAGAAAGCAAGTGAAAAAATTGCAAGAAAAAGAAGGACTGATATTGTAGGTCTTGAGTGTACAGAATGTAACAAACAATACACTTCTAGAAAGGGTTTGCTTCGGCACATTCAAGTTCACGAAGGCAAGAAATATCTTTGTGACATATGCCCAAAGAAATTTTATAGAAGAGAGCATTTAAAAATTCATGTTGCTAAACACAACATGATTAAACCATATAAATGTACACGTTGTACAAAGCGTTTTATTAAGGAGGAACAACTTACAAATCATTTGTCGAAACATGATCGAACCTTTAAAAAGAACAAAGAAACAGACAGTTCTAAAAGGTTTCTTTGTGAAATTTGTTCTAAGAGTTTTACGCAATCGACTACTCTGATAGCACACTTGAGAGCACACAATGGTATTAAGCCATATGTATGCGAGGTCTGCTCAAGGCCATTTACGACTAATGCATATCTAAAAATGCACATGAGAACACATACTCAAGAAAGGCCGTATATTTGTCAGTACTGCTCACGTGCTTTTGCTCGAGCCGATACATTAGCCAACCATTTAACTTCACACACAGGTGAAGCGAAATATCATTGCAAATATTGTCCTAAGAATTTTCGACGATTAAAGTCACTCAAGGAACACGTATTCATACATACAGGGCAACGACCATATGCCTGTCCCACTTGTGATCGTAGATTTAATAATAATGGAAGCCGTTATGCACACAGCAAACGATGCAAGCAAAACTTTTTGCAAAATCAGAATCGCAATCAAACTTTGTCACAAGTGCAAAATCAAACCCAACAGAGAATACATCAGACCCTTAGTCAAACTCAAATAGTCAAAGCACAAAACATAAAGACGATTACCATTGCACGACAAGCTGAACCTGTTGGTACGCAACAGGTACTGCAACACCAGGAAATATTGATGCCACTGATTTTGCCACTTACAGTGACACTCACTGACGTCGGTGAAGAAGTTATATTACCTGAAGGTACAAAAATATATACTACATCATAA
- Protein Sequence
- MDAVEINTSDPPQNENGIVTTVEICRICLLGNLVMRDLFLENEVASLSAKAMSFANVKILIGDGLPTQICCICADKLESAYEFKLQVEQADNVLRERYDTLNIKEELFFNEVEVHLEVERNEGMDELHVGAHYESNVEDVAEELENEKSSLLKDQLALLQVEKLAEEERLAKEGCAMDTVIQDMNKMSDEDLQQKVGVKDEESLTTIIQTSENCKPLKVDGTIVGDTIATDEHDYILHHGSILHNDEVQFSNQESGLCDESRGHSMDVLTESTVAEQTEDEGNVLIRQVHVPTEQELPQSEARRSKRKSARRTFVAERDSDEENYFENLNLSSRLKKVQVDKSEKIYFMCYLCDKQFLSKSVLKEHMHSHEEVRTALSLKRSPEKSQKSSNCSTKLPPSGKRANKCPHCGKEYLYVISFSKHLKQHEREREETKDQRMPLEISFHEDEHSLDFEEYANSQYLDIDCKRRTKREDDVNKDSESQSQSEKDAHRQKRHTNTYVCEKCSENFHTRRDLRKHAISHISLKCSICADTYDTIEKLRNHRTKHVVEGVLTEEDLEEDVKHVIDKEISNSDENDKDDEDDVLTEDTHDDSAWSEANTLKCPNCPMMYSHKKSLSRHMETHSGTKYNCKVCCQQFTRKDHLRRHTEQHGRVKTYKCTQCNKTFGNELTLRNHLIATNHKTFVHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLDDCDDDDNNDFLELHNHYSRRREVMPKKYNYRKELECATCNKTCSSKQSLTKHMEQHVKDEKIEKLEKLEKLRKIPDKKEHQTSCTEIIDDDDADDNSDFESGLDWPMDNHECNTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDIFENNEMLREHRSKHVTEGILTEEDLRDIEPSSEEKKASEKIARKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFLQNQNRNQTLSQVQNQTQQRIHQTLSQTQIVKAQNIKTITIARQAEPVGTQQVLQHQEILMPLILPLTVTLTDVGEEVILPEGTKIYTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454337;
- 90% Identity
- iTF_01454337;
- 80% Identity
- iTF_01454337;