Tfem001614.2
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- PRDM14
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000030.1:85152-88971[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.036 3.3 8.5 0.0 1 20 31 50 31 52 0.95 2 19 1.1e-05 0.001 19.5 1.1 1 22 69 90 69 90 0.96 3 19 0.00011 0.01 16.4 3.0 2 23 128 149 127 149 0.94 4 19 9.2e-05 0.0084 16.6 2.2 1 23 153 175 153 175 0.98 5 19 0.00013 0.012 16.2 1.0 3 23 183 203 182 203 0.97 6 19 1.7e-05 0.0016 18.9 3.6 2 23 210 231 209 231 0.96 7 19 0.41 37 5.2 3.1 1 19 240 262 240 264 0.73 8 19 0.082 7.4 7.4 0.2 3 23 270 289 269 289 0.95 9 19 0.51 47 4.9 2.5 3 13 297 307 296 309 0.89 10 19 0.0021 0.19 12.4 1.7 1 23 398 420 398 420 0.98 11 19 7.9e-06 0.00072 20.0 0.3 2 23 432 454 432 454 0.96 12 19 2.2e-05 0.002 18.6 4.0 1 23 460 482 460 482 0.98 13 19 0.05 4.5 8.0 0.4 1 23 486 508 486 508 0.97 14 19 3.8e-06 0.00035 21.0 1.5 3 23 516 536 514 536 0.97 15 19 4.3e-05 0.004 17.7 0.1 1 23 542 564 542 564 0.98 16 19 0.069 6.2 7.6 0.9 1 23 570 592 570 592 0.97 17 19 7e-07 6.4e-05 23.3 0.1 3 23 600 620 598 620 0.97 18 19 5.9e-07 5.4e-05 23.5 0.6 1 23 626 648 626 648 0.98 19 19 1.1e-07 9.6e-06 25.9 1.9 1 23 654 676 654 676 0.99
Sequence Information
- Coding Sequence
- ATGCGAAGAAAAGCTGAGGAGAATAATCCCCCATATGTGATTCTTCAAGAAATCACCGAGGAGGCTTACATTGTGCATGAGATATCGTCTTACCAATGTGATTCCTGTAACGAGGACTTTGGCACGGAGGCTGCCTTGCTGGTACACAGAACAGAGCAATCCATTTTGAGGACTCGCGAAGCTATGCGCAAAGCAGAGAAAAGGTACGAGTGCGATAGCTGTGGCGAGAGTTTTTCCAAAAAAATGCACCTAATAAAGCATCGACGATCACGCTCAAAAGAGGCGGTAACGATTAAACAAAGGAAGCGAAAGTCGAAAGAAAAAATAACGAAGAGTAAGCATAACGAAGAGCAGACCAGTGGATTGGCCGCTGGGCCGATCGAATGCAATGTTTGCCATAAAGTTTTTAAGAAGAAGAAGTATTTGAACGTTCACAAGACGTTGCACGGTGCTcctcacgtttgtcacgtatgcggggccaagctcacgtcagagtactacttaaagattcacataagacggcacaataaagagttcaccgagttctgtaaagtgtgcaacaaaggattttacctgaaagctactctgaaaactcatatgagtgtgcataccaatgataaaccttgtacttgcgaaatatgccataaagctttcggtaatcgggtctaccttaggagtcacatgaagatacacagtcgaccggagagtagaaaaaagtacagatgcgagatctgtaattttgaaacattttacagctattgctacaaggaacacttgtggacgcatactggtgagagccaagtggcctgcgaaatatgtggaaaattaattcggcgacaatacatgaaaattcacatcagaatacatacgggcgagaaaccggagatctgcgagttttgcggtaaagcgtttagttcgaggaaGTGCAAGGAAATCGACATCGAGGATGCTAAAGTAGAACCGATCGAAGCTTTGAACCAGGAGGAACTGATCAGGTATGAGTGCGATGATTGCACCGTCGAGGAGTACCAAATTAGCCATCAAGAGATTGTCGCTGAGTCGCTGGAATATGTATCCGAAGAGGTAAAGATGGAATTAGAGATGCAACAAGAGGAGGAGAATTCGGAAAGACGGGATGGCCGCAGGCGAGTGCGTACCGAGTGCGATATGATGCGCAAGTCAGTAACGACTTACGAGTGCGAAATATGCGGCAAGAGGATGCGCAAGAAATTGCAATTTTTGAGGCACACGCAGAACCACGAAAGGAATGACGAAGGGGAAGGCAGTGATGGCCGTTGCGAACAATGTGACAGGGTATTCGCCGATGAAGAGAAACTCAGGAAACACATGATCAAAGTGCATCAGGAGGAGAAGCCATTCCAATGTGTCTTATGCGGAAAATGCTTTAAAACCGAAGAATTCTTGAAGACGCACTTAAAACAGCATAACAAGAGGTTCACCTGCGACATTTGCGGAGTGTCCAAGGTATCCGGCTATGATTTACGCTTGCACAAGAAGAAACACAATCAGGAATATGTCACacactgtgaaatttgtggaaaaggattttataccaatcaaactcttgaacgtcaccttctcacgcacactggggagaaaccttttgtgtgcaggatttgcaatactccctatgccagcgctgcttatttgaatatgcacatgaaatcgcatggtcagcgggaaaagcacaaatgtaacatttgcaacttcgaaagctattggaaagctgccctaaaggtacacttaaagatccacactggagagaatcaaattgcttgtgagatttgtggaaaatcggtatccagtaagacttatctacaaatacacatgagaattcactcgggcgagaaacctcacgtttgcgaagtgtgcggcaaggctttcagcgtgcgaaagtatcttatcgtgcatctacgaactcatacaggcgaacgaccttacgaatgcaaagtgtgtcaaaaaagattcacgcaacagggatctttgaactctcacatgaagtcccacagtgagagcaagtga
- Protein Sequence
- MRRKAEENNPPYVILQEITEEAYIVHEISSYQCDSCNEDFGTEAALLVHRTEQSILRTREAMRKAEKRYECDSCGESFSKKMHLIKHRRSRSKEAVTIKQRKRKSKEKITKSKHNEEQTSGLAAGPIECNVCHKVFKKKKYLNVHKTLHGAPHVCHVCGAKLTSEYYLKIHIRRHNKEFTEFCKVCNKGFYLKATLKTHMSVHTNDKPCTCEICHKAFGNRVYLRSHMKIHSRPESRKKYRCEICNFETFYSYCYKEHLWTHTGESQVACEICGKLIRRQYMKIHIRIHTGEKPEICEFCGKAFSSRKCKEIDIEDAKVEPIEALNQEELIRYECDDCTVEEYQISHQEIVAESLEYVSEEVKMELEMQQEEENSERRDGRRRVRTECDMMRKSVTTYECEICGKRMRKKLQFLRHTQNHERNDEGEGSDGRCEQCDRVFADEEKLRKHMIKVHQEEKPFQCVLCGKCFKTEEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCRICNTPYASAAYLNMHMKSHGQREKHKCNICNFESYWKAALKVHLKIHTGENQIACEICGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHSESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -