Tfem007632.2
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- clz9
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000170.1:555712-558878[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-07 0.00011 21.9 0.1 7 41 22 55 19 57 0.92 2 2 3.3 2.7e+03 -1.7 0.1 27 43 351 367 351 369 0.83
Sequence Information
- Coding Sequence
- ATGAGTAAGGAGAAAAAGAAAAGTGCAATAAGGGACAAACAATATACTATTTGtgatgtccaaaatgctttagaggcaataaataaaggaatatcagtttttgcttcaagtaaggcttatggagtaccgtatgctactctttactctagggtaaagggatattaccccatagatgcaaagccaggaccgagcagtattttaagtcgtgaagaagaaaaaggacttgtgcactggatatttgaattaagtaaatgtggattccctggcacaaaggaacatttattggatagtgtacaaaacattgtacaaaaaacaaatagactcacacctttcaccaatggaaggccatcaaagcattggtatcaagcttttatacgaagaaatccggaattggccgaaaaaatgtgccaaaatcttacgaaagcaagagcaagcataacagaagcaaatttgaaaggatggtttaacgaaggtgaaaaagctgtgtacagtgtttgtaacaatgacaaagagtgttacacagctcttataggtggaaatgctgctggacagttacttccaactatggtcatctataataatgaaagaattccacctcttgttgcgaaacattttcctaacgaatttgtacttggaaaaagtgaaactggttggatgacaagtgagacgttttattcctatgttgtcaatcatttgtatcaatggtgcgtgaataataatatacagttccccattatactatatgtggatggacacagttcacatctaaccaaagccttaagtgatttttgctgcactcatgaaatagaacttgttgccttatttccaaatgcaactcacgtgatgcaaccgatggatgttacactgttccatcccctaaaagcagcatacagagatgcagttcgcacgtggcgaatggaaaataatggtcaacaattaaccaaagttttctttcctactgttttaaaaactgctttatattcactggacaatcagaccattttcaaaaatggttttaaaaggtgtggactttttcctttTTCCGAAGATGGCCTAAATTATACAACGTTAATGAAAACTACTAAAACCAATAACACTACGGACAATCAACAGGAACAAGAACAGGTTAATAATGAAAACTCATATCAAGAAAACATGAATTTTGTAGAGAAAAATATTAATACTGATATTTTGGGAGAATTTAAGCATAATTTTCCTAAAGAATGGACAGGTACAGTGCAGTATAAGGAACTGTACAATTTTCGGATACACTGTAAAAACAATGAGAGTGAGAACTTTGAAATTGAAAATTATGAATGTGCAAACGCCACTGAAGCAGAAGTCAACATCACCACGATCAGTGAAATGGAATTTAATGAAATTACTATGGGTGGAGTTGATGACAGCAACTGTACGCTCATTGCTGATGACCAGTCTGGTTTCACTGTGACAGAAAACATTTCAACACAGACAGACTTCAACACAGACATAAGTGCCTCCAAAACAGTGAACAAAACGGAAGAGAATCATAATGAAATTAATTCATTTATAGTTAGCATAGATTCTGTTCAAAGTGATAACAGTGATGTAATTTTAAACCTTGATAGCTTGGACTATGACAGCACGAACAATAATTCTAACTCTGAAAAGGATACTTATCTTTGTACTGAAACGCATGTTACTACTGACAGTCCTTTACATTCCCATGTTGTAAATCACCTATATATTAAGAACCATAATAATAATTTAGATGCAATAGGCAAAATAAAAGGTAAAGAAAACCAAGAATATGCAGGCACTCTTATAGATGATTTGGAAAACATGTCATCTAATCTTAATGGTTCTACTGCACAGTCAGTATTTGGAGACTATCTCTTTTATCCAGACACAAATAAAAGGAATATTAACTCCAAAAAGAAAAGAAGCAAGGAAAAACTTCCACACGTAGCTACTGGTCCAGAATGGAGAGAGTGGCATGAAGTAAAAAAAAAGCAACAAGAAGAACAGCAAGAAAAGAAAGCCAACATGAAAATTTTAAAAGAACAAAAAACAAGAGTAAAGCAGGAATTGCTACAAAATTTACAAAAACTTAAACCTGAAAAGATCAGTGTTTTAAAAGAGCTCAAAGAATTACAACTTAAAATACAAAAATATAAAGCGCAAGAAAAATTATTAAGATTAGAATTAAAAAGTAAACAATTTGAGGGTGGAGATACGTTAGTAGAAAGAGAATTAAAAAATATACAAGAAAACATCAATAAAGATTTAATTCTGAAACAAGATTTATTACAAAAAAAAGAAAATTTTGTACAAGAAGAGAAACGTTTAAAACTTCAACAAATCAATAATAAAAATATATTAGATCCAAATGTAAATAAAATTAATGAAATTATTAATTTAAAATAA
- Protein Sequence
- MSKEKKKSAIRDKQYTICDVQNALEAINKGISVFASSKAYGVPYATLYSRVKGYYPIDAKPGPSSILSREEEKGLVHWIFELSKCGFPGTKEHLLDSVQNIVQKTNRLTPFTNGRPSKHWYQAFIRRNPELAEKMCQNLTKARASITEANLKGWFNEGEKAVYSVCNNDKECYTALIGGNAAGQLLPTMVIYNNERIPPLVAKHFPNEFVLGKSETGWMTSETFYSYVVNHLYQWCVNNNIQFPIILYVDGHSSHLTKALSDFCCTHEIELVALFPNATHVMQPMDVTLFHPLKAAYRDAVRTWRMENNGQQLTKVFFPTVLKTALYSLDNQTIFKNGFKRCGLFPFSEDGLNYTTLMKTTKTNNTTDNQQEQEQVNNENSYQENMNFVEKNINTDILGEFKHNFPKEWTGTVQYKELYNFRIHCKNNESENFEIENYECANATEAEVNITTISEMEFNEITMGGVDDSNCTLIADDQSGFTVTENISTQTDFNTDISASKTVNKTEENHNEINSFIVSIDSVQSDNSDVILNLDSLDYDSTNNNSNSEKDTYLCTETHVTTDSPLHSHVVNHLYIKNHNNNLDAIGKIKGKENQEYAGTLIDDLENMSSNLNGSTAQSVFGDYLFYPDTNKRNINSKKKRSKEKLPHVATGPEWREWHEVKKKQQEEQQEKKANMKILKEQKTRVKQELLQNLQKLKPEKISVLKELKELQLKIQKYKAQEKLLRLELKSKQFEGGDTLVERELKNIQENINKDLILKQDLLQKKENFVQEEKRLKLQQINNKNILDPNVNKINEIINLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -