Tfem007685.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000170.1:989488-995058[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-09 4.4e-06 26.4 0.0 2 37 12 47 11 53 0.92 2 2 0.24 2e+02 1.9 0.0 26 39 75 88 74 91 0.82
Sequence Information
- Coding Sequence
- ATGGCAAAACGTGGTAATTATGGTAAATGGGAAGAAGACAATATGGAAAAAGCATTACATGCGGTAAAAAACAAAGATGGAGGCTTAAATAAAATAGCCAAACTGTTTAATGTGCCAAAAGCAACTTTAAAGAGAAGAATAGATAATGGGAATAAAATTGCGCGTGAATCGCCGTTTCGCCCACTGTGCGGCGTGGCGCAACCGCAGCCCGAACAACTGGACCACGGCGTACCTGCATCGACGAAGCAGCGGCGTCTCGAGCCGAGGCCGAGTGGCGGAGGCGAGGAGCCGTCGAGCCGTCCGCGCCGCCGATGGATGCAGCCGAGGAGGGACGGGCCGGAGAGCAGCCAGGGAGGGGAGGTCGAGGCGACCCCACAACATCACGGGGACCAGCGGCCGGTGCGGGCGGAGCACACCACACCAAGTCAAGGAGGCGAGCCCGAACCGTCGGGGCCCGACGAGCTCCGCCAGGCTGACGTCCAAGGACGGCCGACCGCTGGAGGGGTGATCCACCGTCCCCGAGGACCACGGAGGTCCTCGGAGCCCGCACCGTGTCAGACGTGGCACGGTCCTGGGGAAGCTGTGTGCCTGCCCCGGGCTCGGATGCCTACTTCACCACGACCAGCTGCCACGGCCCCTGGATACCAGCAACCAGCGCTACCTCGCCAAACACTGGGACAGCACGCCACGCCAGGATTCAACTCTACCGGCCTCCTGCCGAGACCGCCACCGAGCAGCCAGGACCCGTCAACGTCATCGGCGATTTCGCCAATTAGAATTAGCGTGCGTTAG
- Protein Sequence
- MAKRGNYGKWEEDNMEKALHAVKNKDGGLNKIAKLFNVPKATLKRRIDNGNKIARESPFRPLCGVAQPQPEQLDHGVPASTKQRRLEPRPSGGGEEPSSRPRRRWMQPRRDGPESSQGGEVEATPQHHGDQRPVRAEHTTPSQGGEPEPSGPDELRQADVQGRPTAGGVIHRPRGPRRSSEPAPCQTWHGPGEAVCLPRARMPTSPRPAATAPGYQQPALPRQTLGQHATPGFNSTGLLPRPPPSSQDPSTSSAISPIRISVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -